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精氨酸418是肌苷酸脱氢酶反应水解步骤所需的催化碱基吗?

Is Arg418 the catalytic base required for the hydrolysis step of the IMP dehydrogenase reaction?

作者信息

Guillén Schlippe Yollete V, Hedstrom Lizbeth

机构信息

Department of Biochemistry, Brandeis University, Waltham, Massachusetts 02454, USA.

出版信息

Biochemistry. 2005 Sep 6;44(35):11700-7. doi: 10.1021/bi048342v.

Abstract

The first committed step of guanine nucleotide biosynthesis is the oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5'-monophosphate (XMP) catalyzed by IMP dehydrogenase. The reaction involves the reduction of NAD(+) with the formation of a covalent enzyme intermediate (E-XMP). Hydrolysis of E-XMP requires the enzyme to adopt a closed conformation and is rate-limiting. Thr321, Arg418, and Tyr419 are candidates for the residue that activates water. The substitution of Thr321 has similar, but small, effects on both the hydride transfer and hydrolysis steps. This result suggests that Thr321 influences the reactivity of Cys319, either through a direct interaction or by stabilizing the structure of the active site loop. The hydrolysis of E-XMP is accelerated by the deprotonation of a residue with a pK(a) of approximately 8. A similar deprotonation stabilizes the closed conformation; this residue has a pK(a) of >or=6 in the closed conformation. The substitution of Tyr419 with Phe does not change the pH dependence of either the hydrolysis of E-XMP or the conformational change, which suggests that Tyr419 is not the residue that activates water. In contrast, the conformational change becomes pH-independent when Arg418 is substituted with Gln. Lys can replace the function of Arg418 in the hydrolysis reaction but does not stabilize the closed conformation. The simplest explanation for these observations is that Arg418 serves as the base that activates water in the IMPDH reaction.

摘要

鸟嘌呤核苷酸生物合成的第一个关键步骤是由肌苷5'-单磷酸(IMP)脱氢酶催化将IMP氧化为黄苷5'-单磷酸(XMP)。该反应涉及NAD(+)的还原并形成共价酶中间体(E-XMP)。E-XMP的水解需要酶采取封闭构象,且是限速步骤。苏氨酸321、精氨酸418和酪氨酸419是激活水的残基的候选者。苏氨酸321的取代对氢化物转移和水解步骤都有相似但较小的影响。这一结果表明,苏氨酸321要么通过直接相互作用,要么通过稳定活性位点环的结构来影响半胱氨酸319的反应性。E-XMP的水解通过一个pK(a)约为8的残基的去质子化而加速。类似的去质子化稳定了封闭构象;该残基在封闭构象中的pK(a)≥6。用苯丙氨酸取代酪氨酸419不会改变E-XMP水解或构象变化的pH依赖性,这表明酪氨酸419不是激活水的残基。相反,当精氨酸418被谷氨酰胺取代时,构象变化变得与pH无关。赖氨酸可以在水解反应中取代精氨酸418的功能,但不能稳定封闭构象。对这些观察结果最简单的解释是,精氨酸418在IMPDH反应中作为激活水的碱。

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