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低扩散物种中的系统发育地理间断:基因树间一致性的出现

Phylogeographic breaks in low-dispersal species: the emergence of concordance across gene trees.

作者信息

Kuo Chih-Horng, Avise John C

机构信息

Department of Genetics, University of Georgia, Athens, GA 30602, USA.

出版信息

Genetica. 2005 Jul;124(2-3):179-86. doi: 10.1007/s10709-005-2095-y.

Abstract

Computer simulations were used to investigate population conditions under which phylogeographic breaks in gene genealogies can be interpreted with confidence to infer the existence and location of historical barriers to gene flow in continuously distributed, low-dispersal species. We generated collections of haplotypic gene trees under a variety of demographic scenarios and analyzed them with regard to salient genealogical breaks in their spatial patterns. In the first part of the analysis, we estimated the frequency in which the spatial location of the deepest phylogeographic break between successive pairs of populations along a linear habitat coincided with a spatial physical barrier to dispersal. Results confirm previous reports that individual gene trees can show 'haphazard' phylogeographic discontinuities even in the absence of historical barriers to gene flow. In the second part of the analysis, we assessed the probability that pairs of gene genealogies from a set of population samples agree upon the location of a geographical barrier. Our findings extend earlier reports by demonstrating that spatially concordant phylogeographic breaks across ;ndependent neutral loci normally emerge only in the presence of longstanding historical barriers to gene flow. Genealogical concordance across multiple loci thus becomes a deciding criterion by which to distinguish between stochastic and deterministic causation in accounting for phylogeographic discontinuities in continuously distributed species.

摘要

计算机模拟被用于研究种群条件,即在这些条件下,基因谱系中的系统发育间断能够被可靠地解释,从而推断在连续分布、低扩散物种中基因流动的历史障碍的存在及位置。我们在各种人口统计学情景下生成了单倍型基因树集合,并针对其空间模式中显著的谱系间断对它们进行分析。在分析的第一部分,我们估计了沿着线性栖息地连续种群对之间最深系统发育间断的空间位置与扩散的空间物理障碍相重合的频率。结果证实了之前的报告,即即使在没有基因流动历史障碍的情况下,单个基因树也可能显示出“随意的”系统发育间断。在分析的第二部分,我们评估了一组种群样本的基因谱系对在地理障碍位置上达成一致的概率。我们的研究结果扩展了早期报告,表明跨独立中性位点的空间一致的系统发育间断通常仅在存在长期基因流动历史障碍的情况下出现。因此,多个位点间的谱系一致性成为区分连续分布物种系统发育间断的随机和确定性原因的决定性标准。

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