• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过欧拉指数样条插值法对非局部赝势进行有效评估。

Efficient evaluation of nonlocal pseudopotentials via Euler exponential spline interpolation.

作者信息

Lee Hee-Seung, Tuckerman Mark E, Martyna Glenn J

机构信息

Department. of Chemistry, New York University, New York, NY 10003, USA.

出版信息

Chemphyschem. 2005 Sep 5;6(9):1827-35. doi: 10.1002/cphc.200500123.

DOI:10.1002/cphc.200500123
PMID:16144012
Abstract

An Euler exponential spline (EES) based formalism is employed to derive new expressions for the electron-atom nonlocal pseudopotential interaction (NL) in electronic structure calculations performed using a plane wave basis set that can be computed more rapidly than standard techniques. Two methods, one that is evaluated by switching between real and reciprocal space via fast Fourier transforms, and another that is evaluated completely in real space, are described. The reciprocal-space or g-space-based technique, NLEES-G, scales as NMlogM approximately N2logN, where N is the number of electronic orbitals and M is the number of plane waves. The real-space based technique, NLEES-R, scales as N2. The latter can potentially be used within a maximally spatially localized orbital method to yield linear scaling, while the former could be employed within a maximally delocalized orbital method to yield NlogN scaling. This behavior is to be contrasted with standard techniques, which scale as N3. The two new approaches are validated using several examples, including solid silicon and liquid water, and demonstrated to be improvements on other, reduced-order nonlocal techniques. Indeed, the new methods have a low overhead and become more efficient than the standard technique for systems with roughly 20 or more atoms. Both NLEES methods are shown to work stably and efficiently within the Car-Parrinello ab initio molecular dynamics framework, owing to the existence of p-2 continuous derivatives of a pth-order spline.

摘要

在使用平面波基组进行的电子结构计算中,采用基于欧拉指数样条(EES)的形式体系来推导电子 - 原子非局部赝势相互作用(NL)的新表达式,该表达式的计算速度比标准技术更快。文中描述了两种方法,一种是通过快速傅里叶变换在实空间和倒易空间之间切换进行评估,另一种是完全在实空间中进行评估。基于倒易空间或g空间的技术NLEES - G的计算量约为NMlogM,近似于N²logN,其中N是电子轨道数,M是平面波数。基于实空间的技术NLEES - R的计算量为N²。后者有可能在最大空间局域化轨道方法中使用以实现线性计算量,而前者可在最大离域化轨道方法中使用以实现NlogN的计算量。这种行为与标准技术形成对比,标准技术的计算量为N³。通过包括固体硅和液态水在内的几个例子验证了这两种新方法,并证明它们比其他降阶非局部技术有所改进。实际上,对于大约20个或更多原子的系统,新方法的开销较低且比标准技术更高效。由于p阶样条存在p - 2阶连续导数,两种NLEES方法在Car - Parrinello从头算分子动力学框架内均显示出稳定且高效的运行效果。

相似文献

1
Efficient evaluation of nonlocal pseudopotentials via Euler exponential spline interpolation.通过欧拉指数样条插值法对非局部赝势进行有效评估。
Chemphyschem. 2005 Sep 5;6(9):1827-35. doi: 10.1002/cphc.200500123.
2
Scalable fine-grained parallelization of plane-wave-based ab initio molecular dynamics for large supercomputers.面向大型超级计算机的基于平面波的从头算分子动力学的可扩展细粒度并行化
J Comput Chem. 2004 Dec;25(16):2006-22. doi: 10.1002/jcc.20113.
3
On-the-fly localization of electronic orbitals in Car-Parrinello molecular dynamics.在卡-帕里尼罗分子动力学中电子轨道的实时定位
J Chem Phys. 2004 Feb 1;120(5):2169-81. doi: 10.1063/1.1636697.
4
Structure of liquid water at ambient temperature from ab initio molecular dynamics performed in the complete basis set limit.基于在完备基组极限下进行的从头算分子动力学研究常温液态水的结构
J Chem Phys. 2006 Oct 21;125(15):154507. doi: 10.1063/1.2354158.
5
A general and efficient pseudopotential Fourier filtering scheme for real space methods using mask functions.一种使用掩码函数的实空间方法的通用且高效的赝势傅里叶滤波方案。
J Chem Phys. 2006 May 7;124(17):174102. doi: 10.1063/1.2193514.
6
Efficient solution of Poisson's equation using discrete variable representation basis sets for Car-Parrinello ab initio molecular dynamics simulations with cluster boundary conditions.在具有团簇边界条件的Car-Parrinello从头算分子动力学模拟中,使用离散变量表示基组高效求解泊松方程。
J Chem Phys. 2008 Dec 14;129(22):224108. doi: 10.1063/1.3036423.
7
Introducing ONETEP: linear-scaling density functional simulations on parallel computers.介绍ONETEP:并行计算机上的线性标度密度泛函模拟。
J Chem Phys. 2005 Feb 22;122(8):84119. doi: 10.1063/1.1839852.
8
Car-Parrinello simulations with a real space method.采用实空间方法的卡-帕里尼罗模拟
J Comput Chem. 2004 Apr 30;25(6):799-812. doi: 10.1002/jcc.20008.
9
X-ray absorption spectra of water within a plane-wave Car-Parrinello molecular dynamics framework.平面波Car-Parrinello分子动力学框架下水中的X射线吸收光谱
J Chem Phys. 2004 Nov 22;121(20):10065-75. doi: 10.1063/1.1807821.
10
Modeling bulk and surface Pt using the "Gaussian and plane wave" density functional theory formalism: validation and comparison to k-point plane wave calculations.使用“高斯和平面波”密度泛函理论形式对块状和表面铂进行建模:验证并与k点平面波计算进行比较。
J Chem Phys. 2008 Dec 21;129(23):234703. doi: 10.1063/1.3037227.

引用本文的文献

1
Understanding the antioxidant behavior of some vitamin molecules: a first-principles density functional approach.理解一些维生素分子的抗氧化行为:一种第一性原理密度泛函方法。
J Mol Model. 2013 Aug;19(8):3175-86. doi: 10.1007/s00894-013-1836-6. Epub 2013 Apr 30.
2
Quantum and classical dynamics simulations of ATP hydrolysis in solution.溶液中ATP水解的量子与经典动力学模拟
J Chem Theory Comput. 2012 Jul 10;8(7):2328-2335. doi: 10.1021/ct200886j. Epub 2012 May 21.
3
Chemical reactivity analysis of deoxyribonucleosides and deoxyribonucleoside analogues (NRTIs): a first-principles density functional approach.
脱氧核苷和脱氧核苷类似物(NRTIs)的化学反应性分析:第一性原理密度泛函方法。
J Mol Model. 2012 Aug;18(8):3969-80. doi: 10.1007/s00894-012-1391-6. Epub 2012 Mar 21.