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在具有团簇边界条件的Car-Parrinello从头算分子动力学模拟中,使用离散变量表示基组高效求解泊松方程。

Efficient solution of Poisson's equation using discrete variable representation basis sets for Car-Parrinello ab initio molecular dynamics simulations with cluster boundary conditions.

作者信息

Lee Hee-Seung, Tuckerman Mark E

机构信息

Department of Chemistry and Biochemistry, University of North Carolina, Wilmington, North Carolina 28403, USA.

出版信息

J Chem Phys. 2008 Dec 14;129(22):224108. doi: 10.1063/1.3036423.

DOI:10.1063/1.3036423
PMID:19071908
Abstract

An efficient computational approach to perform Car-Parrinello ab initio molecular dynamics (CPAIMD) simulations under cluster (free) boundary conditions is presented. The general approach builds upon a recent real-space CPAIMD formalism using discrete variable representation (DVR) basis sets [Y. Liu et al., Phys. Rev. B 12, 125110 (2003); H.-S. Lee and M. E. Tuckerman, J. Phys. Chem. A 110, 5549 (2006)]. In order to satisfy cluster boundary conditions, a DVR based on sinc functions is utilized to expand the Kohn-Sham orbitals and electron density. Poisson's equation is solved in order to calculate the Hartree potential via an integral representation of the 1/r singularity. Excellent convergence properties are achieved with respect to the number of grid points (or DVR functions) and the size of the simulation cell. A straightforward implementation of the present approach leads to near linear scaling [O(N(4/3))] of the computational cost with respect to the system size (N) for the solution of Poisson's equation. The accuracy and stability of CPAIMD simulations based on sinc DVR are tested for a model problem as well as for N(2) and a water dimer.

摘要

提出了一种在团簇(自由)边界条件下进行卡-帕里尼罗从头算分子动力学(CPAIMD)模拟的高效计算方法。该通用方法基于最近使用离散变量表示(DVR)基组的实空间CPAIMD形式主义[Y. Liu等人,《物理评论B》12,125110(2003);H.-S. Lee和M. E. Tuckerman,《物理化学杂志A》110,5549(2006)]。为了满足团簇边界条件,利用基于正弦函数的DVR来展开科恩-沙姆轨道和电子密度。通过求解泊松方程,利用1/r奇异性的积分表示来计算哈特里势。在网格点数量(或DVR函数)和模拟单元大小方面实现了出色的收敛特性。对于泊松方程的求解,本方法的直接实现导致计算成本相对于系统大小(N)接近线性缩放[O(N(4/3))]。基于正弦DVR的CPAIMD模拟的准确性和稳定性针对一个模型问题以及N(2)和一个水二聚体进行了测试。

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