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本文引用的文献

1
Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae.酿酒酵母实验室菌株中升高的进化速率。
Proc Natl Acad Sci U S A. 2005 Jan 25;102(4):1092-7. doi: 10.1073/pnas.0409159102. Epub 2005 Jan 12.
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Very low gene duplication rate in the yeast genome.酵母基因组中极低的基因重复率。
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3
Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts.酵母中多个GAL途径基因的平行失活与生态多样化
Proc Natl Acad Sci U S A. 2004 Sep 28;101(39):14144-9. doi: 10.1073/pnas.0404319101. Epub 2004 Sep 20.
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Genome evolution in yeasts.酵母中的基因组进化
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Evolutionary genomics: yeasts accelerate beyond BLAST.进化基因组学：酵母超越BLAST加速发展。
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Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.早于谷物分化的古代多倍体化及其对比较基因组学的影响。
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The diploid genome sequence of Candida albicans.白色念珠菌的二倍体基因组序列。
Proc Natl Acad Sci U S A. 2004 May 11;101(19):7329-34. doi: 10.1073/pnas.0401648101. Epub 2004 May 3.
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Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae.酿酒酵母中古代基因组复制的证据及进化分析。
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9
The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome.棉阿舒囊霉基因组作为绘制古代酿酒酵母基因组图谱的工具。
Science. 2004 Apr 9;304(5668):304-7. doi: 10.1126/science.1095781. Epub 2004 Mar 4.
10
Génolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts.酵母基因组：半子囊菌酵母的比较基因组学与分子进化
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D315-8. doi: 10.1093/nar/gkh091.

酵母基因顺序浏览器：结合精心整理的同源性和共线性背景揭示多倍体物种中的基因命运。

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species.

作者信息

Byrne Kevin P, Wolfe Kenneth H

机构信息

Department of Genetics, Smurfit Institute, University of Dublin, Trinity College, Dublin 2, Ireland.

出版信息

Genome Res. 2005 Oct;15(10):1456-61. doi: 10.1101/gr.3672305. Epub 2005 Sep 16.

DOI:10.1101/gr.3672305
PMID:16169922
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1240090/
Abstract

We developed the Yeast Gene Order Browser (YGOB; http://wolfe.gen.tcd.ie/ygob) to facilitate visual comparisons and computational analysis of synteny relationships in yeasts. The data presented in YGOB, currently covering seven species, are based on sets of homologous genes that have been intensively manually curated based on both sequence similarity and genomic context (synteny). We reconciled different laboratories' lists of paralogous Saccharomyces cerevisiae gene pairs formed by genome duplication (ohnologs), and present near-exhaustive lists of the ohnolog pairs retained in S. cerevisiae (551, including 22 previously unidentified), Saccharomyces castellii (599), and Candida glabrata (404).

摘要

我们开发了酵母基因顺序浏览器（YGOB；http://wolfe.gen.tcd.ie/ygob），以促进对酵母中同线性关系的可视化比较和计算分析。YGOB中呈现的数据目前涵盖七个物种，这些数据基于同源基因集，这些同源基因集是根据序列相似性和基因组背景（同线性）经过大量人工精心策划的。我们整合了不同实验室列出的由基因组复制形成的酿酒酵母旁系同源基因对（ohnologs），并给出了酿酒酵母（551对，包括22对先前未鉴定的）、葡萄牙假丝酵母（599对）和光滑念珠菌（404对）中保留的ohnolog对的近乎详尽的列表。