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剪接的作用:评估致病序列变化

Splicing in action: assessing disease causing sequence changes.

作者信息

Baralle D, Baralle M

机构信息

Department of Medical Genetics, Box 134, Addenbrooke's Hospital, Hills Road, Cambridge, CB2 2QQ, UK.

出版信息

J Med Genet. 2005 Oct;42(10):737-48. doi: 10.1136/jmg.2004.029538.

DOI:10.1136/jmg.2004.029538
PMID:16199547
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1735933/
Abstract

Variations in new splicing regulatory elements are difficult to identify exclusively by sequence inspection and may result in deleterious effects on precursor (pre) mRNA splicing. These mutations can result in either complete skipping of the exon, retention of the intron, or the introduction of a new splice site within an exon or intron. Sometimes mutations that do not disrupt or create a splice site activate pre-existing pseudo splice sites, consistent with the proposal that introns contain splicing inhibitory sequences. These variants can also affect the fine balance of isoforms produced by alternatively spliced exons and in consequence cause disease. Available genomic pathology data reveal that we are still partly ignorant of the basic mechanisms that underlie the pre-mRNA splicing process. The fact that human pathology can provide pointers to new modulatory elements of splicing should be exploited.

摘要

新型剪接调控元件的变异很难仅通过序列检查来识别,并且可能对前体(pre)mRNA剪接产生有害影响。这些突变可能导致外显子完全跳跃、内含子保留,或者在外显子或内含子内引入新的剪接位点。有时,不破坏或创建剪接位点的突变会激活预先存在的假剪接位点,这与内含子包含剪接抑制序列的观点一致。这些变异还会影响可变剪接外显子产生的异构体的精细平衡,进而导致疾病。现有的基因组病理学数据表明,我们对前体mRNA剪接过程的基本机制仍部分未知。人类病理学能够为剪接的新调控元件提供线索这一事实应加以利用。

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本文引用的文献

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Influence of RNA secondary structure on the pre-mRNA splicing process.RNA二级结构对前体mRNA剪接过程的影响。
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hnRNP H binding at the 5' splice site correlates with the pathological effect of two intronic mutations in the NF-1 and TSHbeta genes.异质性核糖核蛋白H在5'剪接位点的结合与神经纤维瘤病1型基因和促甲状腺激素β基因中两个内含子突变的病理效应相关。
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Nonsense-mediated decay approaches the clinic.无义介导的mRNA降解技术走向临床应用。
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RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons.RESCUE-ESE可识别脊椎动物外显子中的候选外显子剪接增强子。
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An activated 5' cryptic splice site in the human ALG3 gene generates a premature termination codon insensitive to nonsense-mediated mRNA decay in a new case of congenital disorder of glycosylation type Id (CDG-Id).在一例新的糖基化先天性代谢紊乱Id型(CDG-Id)病例中,人类ALG3基因中一个激活的5'隐蔽剪接位点产生了一个对无义介导的mRNA降解不敏感的提前终止密码子。
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