Cupane Antonio, Cammarata Marco, Cordone Lorenzo, Leone Maurizio, Vitrano Eugenio, Engler Niklas, Parak Fritz
Istituto Nazionale per la Fisica della Materia (INFM), Dipartimento di Scienze Fisiche e Astronomiche dell'Università, Via Archirafi 36, 90123 Palermo, Italy.
Eur Biophys J. 2005 Oct;34(7):881-9. doi: 10.1007/s00249-004-0458-4. Epub 2005 Mar 15.
In this work the temperature dependence of the Soret band line shape in carbon-monoxy myoglobin is re-analyzed by using both the full correlator approach in the time domain and the frequency domain approach. The new analyses exploit the full density of vibrational states of carbon-monoxy myoglobin available from normal modes analysis, and avoid the artificial division of the entire set of vibrational modes coupled to the Soret transition into "high-frequency" and "low-frequency" subsets; the frequency domain analysis, however, makes use of the so-called short-times approximation, while the time domain one avoids it. Time domain and frequency domain analyses give very similar results, thus supporting the applicability of the short-times approximation to the analysis of hemeprotein spectra; in particular, they clearly indicate the presence of spectral heterogeneity in the Soret band of carbon-monoxy myoglobin. The analyses also show that a temperature dependence of the Gaussian width parameter steeper than the hyperbolic cotangent law predicted by the Einstein harmonic oscillator and/or a temperature dependence of inhomogeneous broadening are not sufficient to obtain quantitative information on the magnitude of an-harmonic contributions to the iron-heme plane motion. However, the dependence of the previous two quantities may be used to obtain semiquantitative information on the overall coupling of the Soret transition to the low-frequency modes and therefore on the dynamic properties of the heme pocket in different states of the protein.
在这项工作中,通过使用时域中的全关联器方法和频域方法,对一氧化碳肌红蛋白中索雷特带线形的温度依赖性进行了重新分析。新的分析利用了通过简正模式分析可得的一氧化碳肌红蛋白振动状态的全密度,并避免了将与索雷特跃迁耦合的整个振动模式集人为划分为“高频”和“低频”子集;然而,频域分析使用了所谓的短时间近似,而时域分析则避免了这种近似。时域和频域分析给出了非常相似的结果,从而支持了短时间近似在血红素蛋白光谱分析中的适用性;特别是,它们清楚地表明了一氧化碳肌红蛋白索雷特带中存在光谱异质性。分析还表明,高斯宽度参数的温度依赖性比爱因斯坦谐振子预测的双曲余切定律更陡峭,和/或非均匀展宽的温度依赖性,不足以获得关于铁-血红素平面运动的非谐贡献大小的定量信息。然而,前两个量的依赖性可用于获得关于索雷特跃迁与低频模式的整体耦合的半定量信息,从而获得关于蛋白质不同状态下血红素口袋动态特性的半定量信息。