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蛋白质动力学:脱氧血红蛋白和肌红蛋白中的构象无序、振动耦合与非谐性

Protein dynamics: conformational disorder, vibrational coupling and anharmonicity in deoxy-hemoglobin and myoglobin.

作者信息

Cupane A, Leone M, Vitrano E

机构信息

Istituto di Fisica dell' Università, Palermo, Italy.

出版信息

Eur Biophys J. 1993;21(6):385-91. doi: 10.1007/BF00185865.

DOI:10.1007/BF00185865
PMID:8449173
Abstract

In this work we study the temperature dependence of the Soret band lineshape of deoxymyoglobin and deoxyhemoglobin, in the range 300-20 K. To fit the measured spectra we use an approach originally proposed by Champion and coworkers (Srajer et al. 1986; Srajer and Champion 1991). The band profile is modelled as a Voigt function that accounts for the coupling with low frequency vibrational modes, whereas the coupling with high frequency modes is responsible for the vibronic structure of the spectra. Moreover, owing to the position of the iron atom out of the mean heme plane, inhomogeneous broadening brings about a non-Gaussian distribution of 0-0 electronic transition frequencies. The reported analysis enables us to isolate the various contributions to the overall bandwidth, and their temperature dependence points out the relevance of low frequency vibrations and of large scale anharmonic motions starting at temperatures higher than 170 K. Information on the mean iron-heme plane distance and on its temperature dependence, as well as on the heme pocket conformational disorder, is also obtained.

摘要

在这项工作中,我们研究了脱氧肌红蛋白和脱氧血红蛋白的索雷特带线形在300 - 20 K范围内的温度依赖性。为了拟合测量光谱,我们采用了Champion及其同事最初提出的方法(Srajer等人,1986年;Srajer和Champion,1991年)。带轮廓被建模为一个考虑了与低频振动模式耦合的沃伊特函数,而与高频模式的耦合则导致了光谱的振动电子结构。此外,由于铁原子位于平均血红素平面之外,非均匀展宽导致0 - 0电子跃迁频率的非高斯分布。所报道的分析使我们能够分离出对总带宽的各种贡献,并且它们的温度依赖性表明了在高于170 K的温度下低频振动和大规模非谐运动的相关性。还获得了关于平均铁 - 血红素平面距离及其温度依赖性以及血红素口袋构象无序的信息。

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