Raman Rahul, Raguram S, Venkataraman Ganesh, Paulson James C, Sasisekharan Ram
Biological Engineering Division, Center for Biomedical Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA.
Nat Methods. 2005 Nov;2(11):817-24. doi: 10.1038/nmeth807.
In comparison with genomics and proteomics, the advancement of glycomics has faced unique challenges in the pursuit of developing analytical and biochemical tools and biological readouts to investigate glycan structure-function relationships. Glycans are more diverse in terms of chemical structure and information density than are DNA and proteins. This diversity arises from glycans' complex nontemplate-based biosynthesis, which involves several enzymes and isoforms of these enzymes. Consequently, glycans are expressed as an 'ensemble' of structures that mediate function. Moreover, unlike protein-protein interactions, which can be generally viewed as 'digital' in regulating function, glycan-protein interactions impinge on biological functions in a more 'analog' fashion that can in turn 'fine-tune' a biological response. This fine-tuning by glycans is achieved through the graded affinity, avidity and multivalency of their interactions. Given the importance of glycomics, this review focuses on areas of technologies and the importance of developing a bioinformatics platform to integrate the diverse datasets generated using the different technologies to allow a systems approach to glycan structure-function relationships.
与基因组学和蛋白质组学相比,糖组学在开发分析和生化工具以及生物学读数以研究聚糖结构-功能关系方面面临着独特的挑战。聚糖在化学结构和信息密度方面比DNA和蛋白质更加多样。这种多样性源于聚糖基于非模板的复杂生物合成,其中涉及多种酶及其同工型。因此,聚糖以介导功能的结构“集合”形式表达。此外,与通常被视为调节功能的“数字式”蛋白质-蛋白质相互作用不同,聚糖-蛋白质相互作用以更“模拟式”的方式影响生物学功能,进而可以“微调”生物学反应。聚糖的这种微调是通过其相互作用的分级亲和力、亲合力和多价性来实现的。鉴于糖组学的重要性,本综述重点关注技术领域以及开发生物信息学平台的重要性,该平台可整合使用不同技术生成的各种数据集,从而以系统的方法研究聚糖结构-功能关系。