Willemoës Martin, Kilstrup Mogens
Department of Biological Chemistry, Institute of Molecular Biology and Physiology, University of Copenhagen, Sølvgade 83H DK-1307, Denmark.
Arch Biochem Biophys. 2005 Dec 15;444(2):195-9. doi: 10.1016/j.abb.2005.10.003. Epub 2005 Nov 2.
Adenylate kinase (Adk) that catalyses the synthesis of ADP from ATP and AMP has also been shown to perform an ATP dependent phosphorylation of ribo- and deoxynucleoside diphosphates to their corresponding nucleoside triphosphate; ATP+(d)NDP<-->ADP+(d)NTP. This reaction, suggested to occur by the transfer of the gamma-phosphoryl from ATP to the nucleoside diphosphate, is overall similar to that normally carried out by nucleoside diphosphate kinase (Ndk). Accordingly, Adk was proposed to be responsible for residual Ndk-like activity measured in a mutant strain of Escherichia coli, where the ndk gene was disrupted. We present data supporting a mechanism for the synthesis of nucleoside triphosphates by Adk that unlike the previously suggested mechanism mentioned above are in complete agreement with the current knowledge about the Adk enzyme and its various catalytic properties. We propose that nucleoside triphosphate synthesis occurs by beta-phosphoryl transfer from ADP to any bound nucleoside diphosphate. Our results point to the fact that the proposed Ndk-like mechanism of Adk originated from an erroneous interpretation of data, in that contamination of ATP preparations with AMP and ADP was not taken into account. Our results also address the proposed role of Adk in restoring a normal growth rate of mutant strains of E. coli lacking Ndk. These mutant strains apparently, in spite of a mutator phenotype, are able to synthesise nucleoside triphosphates by alternative pathways to maintain the same growth rate as the wildtype.
催化由ATP和AMP合成ADP的腺苷酸激酶(Adk)也已被证明能将核糖核苷二磷酸和脱氧核苷二磷酸进行依赖ATP的磷酸化反应,生成相应的核苷三磷酸;ATP +(d)NDP <--> ADP +(d)NTP。该反应被认为是通过将γ - 磷酸基团从ATP转移到核苷二磷酸上而发生的,总体上类似于核苷二磷酸激酶(Ndk)通常进行的反应。因此,有人提出Adk负责在大肠杆菌的一个突变株中测得的残余的类似Ndk的活性,在该突变株中ndk基因被破坏。我们提供的数据支持了一种由Adk合成核苷三磷酸的机制,与上述先前提出的机制不同,该机制与目前关于Adk酶及其各种催化特性的知识完全一致。我们提出核苷三磷酸的合成是通过ADP的β - 磷酸基团转移到任何结合的核苷二磷酸上而发生的。我们的结果表明,所提出的Adk的类似Ndk的机制源于对数据的错误解读,因为没有考虑到ATP制剂被AMP和ADP污染的情况。我们的结果还涉及到Adk在恢复缺乏Ndk的大肠杆菌突变株正常生长速率方面所提出的作用。这些突变株显然尽管具有突变体表型,但能够通过替代途径合成核苷三磷酸,以维持与野生型相同的生长速率。