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面向埃丝特(ESTHER)用户的新型友好工具,埃丝特是α/β-水解酶折叠超家族蛋白质的数据库。

New friendly tools for users of ESTHER, the database of the alpha/beta-hydrolase fold superfamily of proteins.

作者信息

Renault Ludovic, Nègre Vincent, Hotelier Thierry, Cousin Xavier, Marchot Pascale, Chatonnet Arnaud

机构信息

Ingénierie des Protéines CNRS, IFR Jean Roche, Université de la Méditerranée, Marseille, France.

出版信息

Chem Biol Interact. 2005 Dec 15;157-158:339-43. doi: 10.1016/j.cbi.2005.10.100. Epub 2005 Nov 17.

Abstract

The structural alpha/beta-hydrolase fold is characterized by a beta-sheet core of five to eight strands connected by alpha-helices to form a alpha/beta/alpha sandwich. The superfamily members, exemplified by the cholinesterases, diverged from a common ancestor into a number of hydrolytic enzymes displaying a wide range of substrate specificities, along with proteins with no recognized hydrolytic activity. In the enzymes, the catalytic triad residues are presented on loops of which one, the nucleophile elbow, is the most conserved feature of the fold. Of the other proteins, which all lack from one to all of the catalytic residues, some may simply be 'inactive' enzymes while others have been shown to be involved in heterologous surface recognition functions. The ESTHER (for esterases, alpha/beta-hydrolase enzymes and relatives) database (http://bioweb.ensam.inra.fr.esther) gathers and annotates all the published pieces of information (gene and protein sequences; biochemical, pharmacological, and structural data) related to the superfamily, and connects them together to provide the bases for studying structure-function relationships within the superfamily. The most recent developments of the database are presented.

摘要

结构α/β-水解酶折叠的特征是由五到八条链组成的β-折叠核心,这些链通过α-螺旋连接形成α/β/α三明治结构。以胆碱酯酶为例的超家族成员从一个共同祖先分化出多种水解酶,这些水解酶具有广泛的底物特异性,同时还包括一些没有公认水解活性的蛋白质。在这些酶中,催化三联体残基位于环上,其中一个环即亲核体肘部是该折叠结构中最保守的特征。在其他所有缺少一个至全部催化残基的蛋白质中,一些可能只是“无活性”的酶,而另一些已被证明参与异源表面识别功能。ESTHER(酯酶、α/β-水解酶及其相关酶)数据库(http://bioweb.ensam.inra.fr.esther)收集并注释了所有已发表的与该超家族相关的信息(基因和蛋白质序列;生化、药理和结构数据),并将它们联系在一起,为研究超家族内的结构-功能关系提供基础。本文介绍了该数据库的最新进展。

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