Yu Xin-pei, Chen Yue, Zhang Li-yun, Lu Xiao, Chen Zheng-liang
Department of Immunology, Southern Medical University, Guangzhou 510515, China.
Di Yi Jun Yi Da Xue Xue Bao. 2005 Nov;25(11):1379-83.
To construct the standard recombinant plasmids for 7 common haplotypes of mannan-binding lectin (MBL) gene.
The DNA samples with known haplotypes and genotypes of MBL gene were used as the templates for amplifying the fragments of MBL gene haplotypes including the promoter region and exon 1 with sequence-specific primer-polymerase chain reaction (SSP-PCR) method. The amplified fragments were cloned into T vector and the bases located at codon 52 and codon 57 of exon 1 in MBL gene were mutated respectively by site-directed mutagenesis. All the 7 recombinant plasmids were identified by PCR and direct sequence analysis.
From the DNA samples with known haplotypes and genotypes of MBL gene, the standard plasmids of haplotypes HYPA, LXPA, LYQA, LYPA and LYPB of MBL gene were constructed by SSP-PCR and molecular cloning technique. From the recombinant plasmids of HYPA and LYQA, the standard plasmids of haplotypes HYPD and LYQC of MBL gene were constructed by site-directed mutagenesis, respectively.
The constructed standard plasmids of haplotypes HYPA, LXPA, LYQA, LYPA, LYPB, HYPD and LYQC of MBL gene provide standard controls for detecting the SNPs, haplotypes and genotypes of MBL gene with such genotyping methods us SSP-PCR and real-time PCR.
构建甘露聚糖结合凝集素(MBL)基因7种常见单倍型的标准重组质粒。
以已知MBL基因单倍型和基因型的DNA样本为模板,采用序列特异性引物-聚合酶链反应(SSP-PCR)法扩增包括启动子区和外显子1的MBL基因单倍型片段。将扩增片段克隆到T载体中,通过定点诱变分别对MBL基因外显子1第52密码子和第57密码子处的碱基进行突变。通过PCR和直接序列分析对所有7种重组质粒进行鉴定。
利用SSP-PCR和分子克隆技术,从已知MBL基因单倍型和基因型的DNA样本中构建了MBL基因单倍型HYPA、LXPA、LYQA、LYPA和LYPB的标准质粒。分别通过定点诱变,从HYPA和LYQA重组质粒构建了MBL基因单倍型HYPD和LYQC的标准质粒。
构建的MBL基因单倍型HYPA、LXPA、LYQA、LYPA、LYPB、HYPD和LYQC的标准质粒为采用SSP-PCR和实时PCR等基因分型方法检测MBL基因的单核苷酸多态性、单倍型和基因型提供了标准对照。