Vigil Dominico, Lin Jung-Hsin, Sotriffer Christoph A, Pennypacker Juniper K, McCammon J Andrew, Taylor Susan S
Department of Chemistry and Biochemistry, University of California, San Diego, San Diego, CA 92037, USA.
Protein Sci. 2006 Jan;15(1):113-21. doi: 10.1110/ps.051723606. Epub 2005 Dec 1.
Cyclic AMP activates protein kinase A by binding to an inhibitory regulatory (R) subunit and releasing inhibition of the catalytic (C) subunit. Even though crystal structures of regulatory and catalytic subunits have been solved, the precise molecular mechanism by which cyclic AMP activates the kinase remains unknown. The dynamic properties of the cAMP binding domain in the absence of cAMP or C-subunit are also unknown. Here we report molecular-dynamics simulations and mutational studies of the RIalpha R-subunit that identify the C-helix as a highly dynamic switch which relays cAMP binding to the helical C-subunit binding regions. Furthermore, we identify an important salt bridge which links cAMP binding directly to the C-helix that is necessary for normal activation. Additional mutations show that a hydrophobic "hinge" region is not as critical for the cross-talk in PKA as it is in the homologous EPAC protein, illustrating how cAMP can control diverse functions using the evolutionarily conserved cAMP-binding domains.
环磷酸腺苷(cAMP)通过与抑制性调节(R)亚基结合并解除对催化(C)亚基的抑制来激活蛋白激酶A。尽管调节亚基和催化亚基的晶体结构已被解析,但cAMP激活该激酶的确切分子机制仍不清楚。在没有cAMP或C亚基的情况下,cAMP结合结构域的动态特性也不清楚。在此,我们报告了对RIα R亚基的分子动力学模拟和突变研究,确定C螺旋是一个高度动态的开关,它将cAMP结合传递到螺旋C亚基结合区域。此外,我们确定了一个重要的盐桥,它将cAMP结合直接与正常激活所必需的C螺旋相连。额外的突变表明,疏水“铰链”区域对蛋白激酶A中的串扰不像在同源的交换蛋白直接激活因子(EPAC)蛋白中那样关键,这说明了cAMP如何利用进化上保守的cAMP结合结构域来控制多种功能。