Kapota Catherine, Ohanessian Gilles
Laboratoire des Mécanismes Réactionnels, UMR CNRS 7651, Ecole Polytechnique, 91128 Palaiseau Cedex, France.
Phys Chem Chem Phys. 2005 Nov 7;7(21):3744-55. doi: 10.1039/b508092d. Epub 2005 Sep 9.
The low-lying conformers of the dipeptides HisGly and GlyHis, and of their sodium cation complexes, have been studied with a combination of Monte Carlo search with the Amber force field and local geometry optimization at the ab initio HF/6-31G(d) level, completed with MP2(full)/6-311+G(2d,2p) energetics at the HF/6-31G(d) geometries. For each dipeptide, both the N(delta)-H and N(epsilon)-H tautomers of the imidazole side chain of His were considered. For each of the four isomeric dipeptides, 20-30 conformers were fully characterized at the ab initio level. All low energy structures are found to involve H-bonding at the N(delta) position of imidazole, either as a N-H donor or a N acceptor, depending upon the tautomer. In three out of the four species, the most stable conformer involves a C-terminus carboxylic acid in its less favorable trans conformation, in order to maximize intramolecular H bonding. It turns out that the lowest energy tautomer of HisGly is N(epsilon)-H, while that of GlyHis is N(delta)-H. This result argues in favor of the diversity of His tautomeric states in peptides and proteins. The sodium cation complexes of both GlyHis and HisGly have been studied as well, again considering both tautomers in each case. In three out of the four species, the most stable structure involves chelation of sodium by the two carbonyl oxygens and the imidazole ring. On the contrary, the sodium complex of the N(delta)-H tautomer of HisGly favors chelation to the peptidic carbonyl oxygen, the imidazole ring and the amino terminus. In the N(epsilon)-H tautomers of both peptides, the most favorable binding site of imidazole is the N(delta) nitrogen, while in the N(delta)-H tautomers, it is the pi cloud which provides side chain interaction. As a result, both GlyHisNa+ and HisGlyNa+ favor the N(epsilon)-H tautomer of His, in contrast to what was found for the free peptides.
利用蒙特卡罗搜索结合Amber力场以及在从头算HF/6 - 31G(d)水平上进行局部几何结构优化,并在HF/6 - 31G(d)几何结构基础上完成MP2(full)/6 - 311 + G(2d,2p)能量计算,对二肽HisGly和GlyHis及其钠阳离子配合物的低能构象进行了研究。对于每个二肽,都考虑了His咪唑侧链的N(δ)-H和N(ε)-H互变异构体。对于这四种异构二肽中的每一种,在从头算水平上对20 - 30个构象进行了全面表征。发现所有低能结构都涉及咪唑N(δ)位置的氢键作用,根据互变异构体的不同,它既可以作为N - H供体,也可以作为N受体。在这四个物种中的三个中,最稳定的构象涉及C末端羧酸处于较不利的反式构象,以最大化分子内氢键。结果表明,HisGly的最低能量互变异构体是N(ε)-H,而GlyHis的是N(δ)-H。这一结果支持了His在肽和蛋白质中互变异构状态的多样性。还对GlyHis和HisGly的钠阳离子配合物进行了研究,同样在每种情况下都考虑了两种互变异构体。在这四个物种中的三个中,最稳定的结构涉及钠与两个羰基氧和咪唑环的螯合。相反,HisGly的N(δ)-H互变异构体的钠配合物倾向于与肽羰基氧、咪唑环和氨基末端螯合。在两种肽的N(ε)-H互变异构体中,咪唑最有利的结合位点是N(δ)氮,而在N(δ)-H互变异构体中,是π电子云提供侧链相互作用。因此,与游离肽的情况相反,GlyHisNa⁺和HisGlyNa⁺都倾向于His的N(ε)-H互变异构体。