MEROPS:肽酶数据库。

MEROPS: the peptidase database.

作者信息

Rawlings Neil D, Morton Fraser R, Barrett Alan J

机构信息

The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK.

出版信息

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D270-2. doi: 10.1093/nar/gkj089.

Abstract

Peptidases (proteolytic enzymes) and their natural, protein inhibitors are of great relevance to biology, medicine and biotechnology. The MEROPS database (http://merops.sanger.ac.uk) aims to fulfil the need for an integrated source of information about these proteins. The organizational principle of the database is a hierarchical classification in which homologous sets of proteins of interest are grouped into families and the homologous families are grouped in clans. The most important addition to the database has been newly written, concise text annotations for each peptidase family. Other forms of information recently added include highlighting of active site residues (or the replacements that render some homologues inactive) in the sequence displays and BlastP search results, dynamically generated alignments and trees at the peptidase or inhibitor level, and a curated list of human and mouse homologues that have been experimentally characterized as active. A new way to display information at taxonomic levels higher than species has been devised. In the Literature pages, references have been flagged to draw attention to particularly 'hot' topics.

摘要

肽酶(蛋白水解酶)及其天然的蛋白质抑制剂与生物学、医学和生物技术密切相关。MEROPS数据库(http://merops.sanger.ac.uk)旨在满足对这些蛋白质综合信息源的需求。该数据库的组织原则是一种层次分类,其中感兴趣的同源蛋白质组被归为家族,同源家族又被归为 clans。数据库最重要的新增内容是为每个肽酶家族新编写的简洁文本注释。最近添加的其他信息形式包括在序列显示和BlastP搜索结果中突出显示活性位点残基(或使某些同源物无活性的替代物)、在肽酶或抑制剂水平动态生成的比对和树,以及经过实验表征为有活性的人类和小鼠同源物的精选列表。已经设计出一种在高于物种的分类水平上显示信息的新方法。在文献页面中,参考文献已被标记,以引起对特别“热门”主题的关注。

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