Ecke David J, Sampath Rangarajan, Willett Paul, Samant Vivek, Massire Christian, Hall Thomas A, Hari Kumar, McNeil John A, Büchen-Osmond Cornelia, Budowle Bruce
Ibis Division of Isis Pharmaceuticals, 1891 Rutherford Rd., Carlsbad, CA 92008, USA.
J Forensic Sci. 2005 Nov;50(6):1380-5.
Infectious microorganisms are important to multiple communities engaged in biodefense and biosecurity, including the agencies responsible for health, defense, law enforcement, agriculture, and drug and food safety. Many agencies have created lists of high priority infectious microorganisms to prioritize research efforts or to formally control the possession and distribution of specific organisms or toxins. However, the biological classification of infectious microorganisms is often complex and ambiguous, leading to uncertainty and confusion for scientists involved in biosecurity work. To address this problem, we created a database, known as the Microbial Rosetta Stone, which resolves many of these ambiguities and includes links to additional information on the microbes, such as gene sequence data and scientific literature. Here we discuss the efforts to coordinate organism names from pathogen lists from various governmental agencies according to biological relatedness and show the overlap of high-priority organisms from multiple agencies. To our knowledge, this is the first comprehensive coordination of pathogens, synonyms, and correct taxonomic names. The organized tables and visual aids are freely available at http://www.microbialrosettastone.com. This website provides a single location where access to information on a broad range of disease-causing organisms and toxins is available to members of the biosecurity community.
传染性微生物对多个参与生物防御和生物安全的群体都很重要,这些群体包括负责卫生、国防、执法、农业以及药品和食品安全的机构。许多机构已经制定了高优先级传染性微生物清单,以便对研究工作进行优先级排序,或正式控制特定生物体或毒素的持有和传播。然而,传染性微生物的生物学分类往往复杂且模糊,给从事生物安全工作的科学家带来了不确定性和困惑。为了解决这个问题,我们创建了一个名为“微生物罗塞塔石碑”的数据库,该数据库解决了许多此类模糊问题,并包含指向有关微生物的其他信息的链接,如基因序列数据和科学文献。在这里,我们讨论了根据生物学相关性协调来自不同政府机构病原体清单中生物体名称的工作,并展示了多个机构高优先级生物体的重叠情况。据我们所知,这是首次对病原体、同义词和正确分类学名称进行全面协调。这些整理好的表格和可视化工具可在http://www.microbialrosettastone.com上免费获取。该网站提供了一个单一的地点,生物安全界的成员可以在那里获取有关广泛致病生物体和毒素的信息。