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受组蛋白启发的纳米颗粒对单链DNA的压缩作用

Compaction of single-chain DNA by histone-inspired nanoparticles.

作者信息

Zinchenko Anatoly A, Yoshikawa Kenichi, Baigl Damien

机构信息

Department of Physics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.

出版信息

Phys Rev Lett. 2005 Nov 25;95(22):228101. doi: 10.1103/PhysRevLett.95.228101. Epub 2005 Nov 21.

DOI:10.1103/PhysRevLett.95.228101
PMID:16384267
Abstract

We elaborated a versatile experimental model of chromatin which consists of a single chain of long duplex DNA that interacts with well-defined cationic nanoparticles of various sizes. We found that the DNA compaction by nanoparticles is stepwise and progressive at the single-chain level. It is controlled by the ability of DNA to wrap nanoparticles, which is more efficient for larger particles and, similar to DNA-histone interaction, is optimal at a physiological salt concentration.

摘要

我们构建了一种通用的染色质实验模型,该模型由一条长双链DNA单链组成,其与各种大小明确的阳离子纳米颗粒相互作用。我们发现,在单链水平上,纳米颗粒对DNA的压缩是逐步且渐进的。它受DNA包裹纳米颗粒能力的控制,对于较大颗粒这种能力更强,并且与DNA-组蛋白相互作用类似在生理盐浓度下最为理想。

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1
Compaction of single-chain DNA by histone-inspired nanoparticles.受组蛋白启发的纳米颗粒对单链DNA的压缩作用
Phys Rev Lett. 2005 Nov 25;95(22):228101. doi: 10.1103/PhysRevLett.95.228101. Epub 2005 Nov 21.
2
Single-chain compaction of long duplex DNA by cationic nanoparticles: modes of interaction and comparison with chromatin.阳离子纳米颗粒对长双链DNA的单链压缩:相互作用模式及与染色质的比较
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引用本文的文献

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Effect of DNA Flexibility on Complex Formation of a Cationic Nanoparticle with Double-Stranded DNA.DNA柔韧性对阳离子纳米颗粒与双链DNA形成复合物的影响。
ACS Omega. 2021 Jul 15;6(29):18728-18736. doi: 10.1021/acsomega.1c01709. eCollection 2021 Jul 27.
2
DNA Compaction and Charge Neutralization Regulated by Divalent Ions in very Low pH Solution.极低pH溶液中由二价离子调控的DNA压缩与电荷中和
Polymers (Basel). 2019 Feb 15;11(2):337. doi: 10.3390/polym11020337.
3
Single-molecule compaction of megabase-long chromatin molecules by multivalent cations.
多价阳离子使 megabase 长染色质分子单分子紧缩。
Nucleic Acids Res. 2018 Jan 25;46(2):635-649. doi: 10.1093/nar/gkx1135.
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Photochromic switching of the DNA helicity induced by azobenzene derivatives.偶氮苯衍生物诱导的 DNA 螺旋构象的光致变色开关。
Sci Rep. 2016 Jun 24;6:28605. doi: 10.1038/srep28605.
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Topological constraints strongly affect chromatin reconstitution in silico.拓扑约束在计算机模拟中对染色质重构有强烈影响。
Nucleic Acids Res. 2015 Jan;43(1):63-73. doi: 10.1093/nar/gku1085. Epub 2014 Nov 28.
6
Noncovalent interactions of tiopronin-protected gold nanoparticles with DNA: two methods to quantify free energy of binding.硫普罗宁保护的金纳米颗粒与DNA的非共价相互作用:两种量化结合自由能的方法。
ScientificWorldJournal. 2014 Jan 22;2014:143645. doi: 10.1155/2014/143645. eCollection 2014.
7
Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization.非特异性桥接诱导的吸引力驱动 DNA 结合蛋白的聚集和基因组组织。
Proc Natl Acad Sci U S A. 2013 Sep 17;110(38):E3605-11. doi: 10.1073/pnas.1302950110. Epub 2013 Sep 3.
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Transcription of giant DNA complexed with cationic nanoparticles as a simple model of chromatin.与阳离子纳米颗粒复合的巨型DNA转录作为染色质的简单模型。
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