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使用à trous小波变换自动检测基本钙释放事件。

Automated detection of elementary calcium release events using the á trous wavelet transform.

作者信息

v Wegner F, Both M, Fink R H A

机构信息

Institute of Physiology and Pathophysiology, Medical Biophysics, University of Heidelberg, INF 326, D-69120 Heidelberg, Germany.

出版信息

Biophys J. 2006 Mar 15;90(6):2151-63. doi: 10.1529/biophysj.105.069930. Epub 2005 Dec 30.

Abstract

We developed an algorithm for the automated detection and analysis of elementary Ca2+ release events (ECRE) based on the two-dimensional nondecimated wavelet transform. The transform is computed with the "à trous" algorithm using the cubic B-spline as the basis function and yields a multiresolution analysis of the image. This transform allows for highly efficient noise reduction while preserving signal amplitudes. ECRE detection is performed at the wavelet levels, thus using the whole spectral information contained in the image. The algorithm was tested on synthetic data at different noise levels as well as on experimental data of ECRE. The noise dependence of the statistical properties of the algorithm (detection sensitivity and reliability) was determined from synthetic data and detection parameters were selected to optimize the detection of experimental ECRE. The wavelet-based method shows considerably higher detection sensitivity and less false-positive counts than previously employed methods. It allows a more efficient detection of elementary Ca2+ release events than conventional methods, in particular in the presence of elevated background noise levels. The subsequent analysis of the morphological parameters of ECRE is reliably reproduced by the analysis procedure that is applied to the median filtered raw data. Testing the algorithm more rigorously showed that event parameter histograms (amplitude, rise time, full duration at half-maximum, and full width at half-maximum) were faithfully extracted from synthetic, "in-focus" and "out-of-focus" line scan sparks. Most importantly, ECRE obtained with laser scanning confocal microscopy of chemically skinned mammalian skeletal muscle fibers could be analyzed automatically to reproducibly establish event parameter histograms. In summary, our method provides a new valuable tool for highly reliable automated detection of ECRE in muscle but can also be adapted to other preparations.

摘要

我们基于二维非抽取小波变换开发了一种用于自动检测和分析基本Ca2+释放事件(ECRE)的算法。该变换使用“à trous”算法,以三次B样条作为基函数进行计算,并对图像进行多分辨率分析。这种变换在保留信号幅度的同时能够高效降噪。ECRE检测在小波层级上进行,从而利用图像中包含的全部光谱信息。该算法在不同噪声水平的合成数据以及ECRE的实验数据上进行了测试。通过合成数据确定了算法统计特性(检测灵敏度和可靠性)对噪声的依赖性,并选择检测参数以优化对实验性ECRE的检测。与先前使用的方法相比,基于小波的方法具有更高的检测灵敏度和更少的假阳性计数。与传统方法相比,它能够更有效地检测基本Ca2+释放事件,特别是在背景噪声水平升高的情况下。应用于中值滤波后的原始数据的分析程序能够可靠地再现对ECRE形态参数的后续分析。对该算法进行更严格的测试表明,事件参数直方图(幅度、上升时间、半高全宽和半峰全宽)能够从合成的、“聚焦”和“散焦”线扫描火花中准确提取。最重要的是,通过化学去膜的哺乳动物骨骼肌纤维的激光扫描共聚焦显微镜获得的ECRE能够被自动分析,以可重复的方式建立事件参数直方图。总之,我们的方法为肌肉中ECRE的高度可靠自动检测提供了一种新的有价值工具,并且也可适用于其他标本。

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