Chandrasekhar Indira, van Gunsteren Wilfred F, Zandomeneghi Giorgia, Williamson Philip T F, Meier Beat H
Laboratory of Physical Chemistry, ETH Zurich, 8093 Zurich, Switzerland.
J Am Chem Soc. 2006 Jan 11;128(1):159-70. doi: 10.1021/ja054785q.
The morphogenic opiate pentapeptide leucine-enkephalin (lenk) in a hydrated dimyristoylphosphatidylcholine (DMPC) bilayer is studied using NMR spectroscopy and molecular dynamics simulation. Contrary to the frequent assumption that the peptide attains a single fixed conformation in the presence of membranes, we find that the lenk molecule is flexible, switching between specific bent conformations. The constraints to the orientation of the aromatic rings that are identified by the NMR experiment are found by the MD simulation to be related to the depth of the peptide in the bilayer. The motion of the N-H vectors of the peptide bonds with respect to the magnetic field direction as observed by MD largely explain the magnitude of the observed residual dipolar coupling (RDC), which are much reduced over the static (15)N-(1)H coupling. The measured RDCs are nevertheless significantly larger than the predicted ones, possibly due the absence of long-time motions in the simulations. The conformational behavior of lenk at the DMPC surface is compared to that in the aqueous solution, both in the neutral and in the zwitterionic forms.
利用核磁共振光谱和分子动力学模拟研究了水合二肉豆蔻酰磷脂酰胆碱(DMPC)双层膜中的形态发生阿片肽五肽亮氨酸脑啡肽(lenk)。与肽在膜存在下获得单一固定构象的常见假设相反,我们发现lenk分子是灵活的,在特定的弯曲构象之间切换。通过MD模拟发现,NMR实验确定的芳香环取向的限制与肽在双层膜中的深度有关。MD观察到的肽键N-H向量相对于磁场方向的运动在很大程度上解释了观察到的剩余偶极耦合(RDC)的大小,与静态(15)N-(1)H耦合相比,RDC大大降低。然而,测量的RDC明显大于预测值,这可能是由于模拟中缺乏长时间运动。将lenk在DMPC表面的构象行为与中性和两性离子形式的水溶液中的构象行为进行了比较。