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本文引用的文献

1
Difluorotoluene, a Nonpolar Isostere for Thymine, Codes Specifically and Efficiently for Adenine in DNA Replication.二氟甲苯,胸腺嘧啶的一种非极性生物电子等排体,在DNA复制中特异性且高效地编码腺嘌呤。
J Am Chem Soc. 1997 Feb 26;119(8):2056-2057. doi: 10.1021/ja963718g.
2
Probing the active site tightness of DNA polymerase in subangstrom increments.以亚埃级增量探究DNA聚合酶活性位点的紧密程度。
Proc Natl Acad Sci U S A. 2005 Nov 1;102(44):15803-8. doi: 10.1073/pnas.0505113102. Epub 2005 Oct 25.
3
The use of thymidine analogs to improve the replication of an extra DNA base pair: a synthetic biological system.使用胸苷类似物来改善额外DNA碱基对的复制:一种合成生物学系统。
Nucleic Acids Res. 2005 Sep 28;33(17):5640-6. doi: 10.1093/nar/gki873. Print 2005.
4
Expanded-size bases in naturally sized DNA: evaluation of steric effects in Watson-Crick pairing.天然大小的DNA中的扩展大小碱基:沃森-克里克配对中空间效应的评估。
J Am Chem Soc. 2004 Sep 29;126(38):11826-31. doi: 10.1021/ja048499a.
5
A residue in MutY important for catalysis identified by photocross-linking and mass spectrometry.通过光交联和质谱鉴定出MutY中对催化作用重要的一个残基。
Biochemistry. 2004 Jan 27;43(3):651-62. doi: 10.1021/bi035537e.
6
Drug methylation in cancer therapy: lessons from the TPMT polymorphism.癌症治疗中的药物甲基化:来自硫嘌呤甲基转移酶多态性的经验教训。
Oncogene. 2003 Oct 20;22(47):7403-13. doi: 10.1038/sj.onc.1206944.
7
Ambiguous coding is required for the lethal interaction between methylated DNA bases and DNA mismatch repair.甲基化DNA碱基与DNA错配修复之间的致死性相互作用需要模糊编码。
DNA Repair (Amst). 2002 Apr 29;1(4):275-86. doi: 10.1016/s1568-7864(02)00004-6.
8
Structure and dynamics of thioguanine-modified duplex DNA.硫鸟嘌呤修饰的双链DNA的结构与动力学
J Biol Chem. 2003 Jan 10;278(2):1005-11. doi: 10.1074/jbc.M204243200. Epub 2002 Oct 24.
9
Implications of active site constraints on varied DNA polymerase selectivity.
J Am Chem Soc. 2002 Sep 25;124(38):11230-1. doi: 10.1021/ja027060k.
10
Active site tightness and substrate fit in DNA replication.DNA复制中的活性位点紧密性与底物契合度
Annu Rev Biochem. 2002;71:191-219. doi: 10.1146/annurev.biochem.71.110601.135453. Epub 2001 Nov 9.

硫代胸苷(胸苷的扩展大小变体)的碱基配对增强及复制效率提高。

Enhanced base pairing and replication efficiency of thiothymidines, expanded-size variants of thymidine.

作者信息

Sintim Herman O, Kool Eric T

机构信息

Department of Chemistry, Stanford University, California 94305-5080, USA.

出版信息

J Am Chem Soc. 2006 Jan 18;128(2):396-7. doi: 10.1021/ja0562447.

DOI:10.1021/ja0562447
PMID:16402811
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2555968/
Abstract

Here we test the steric effects of added size on DNA base pairing and replication by the use of thiocarbonyl group replacements for natural nucleoside thymidine. The 2-thioT (2S) and 4-thioT (4S) nucleosides were reported previously, but their pairing specificity and replication fidelity were unknown. We find that 2S pairs with higher specificity than thymidine, and both 2S and 4S nucleoside triphosphates are replicated with higher efficiency than natural dTTP. The results indicate possible biotechnological uses for these analogues and have implications in the ongoing use of thionucleobases in cancer treatment.

摘要

在这里,我们通过使用硫代羰基取代天然核苷胸腺嘧啶来测试添加的大小对DNA碱基配对和复制的空间效应。2-硫代胸腺嘧啶(2S)和4-硫代胸腺嘧啶(4S)核苷此前已有报道,但其配对特异性和复制保真度尚不清楚。我们发现,2S的配对特异性高于胸腺嘧啶,并且2S和4S核苷三磷酸的复制效率均高于天然的三磷酸胸苷(dTTP)。这些结果表明这些类似物可能具有生物技术用途,并且对硫代碱基在癌症治疗中的持续应用具有启示意义。