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内含子的兴衰

The rise and falls of introns.

作者信息

Belshaw R, Bensasson D

机构信息

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

出版信息

Heredity (Edinb). 2006 Mar;96(3):208-13. doi: 10.1038/sj.hdy.6800791.

DOI:10.1038/sj.hdy.6800791
PMID:16449982
Abstract

There has been a lively debate over the evolution of eukaryote introns: at what point in the tree of life did they appear and from where, and what has been their subsequent pattern of loss and gain? A diverse range of recent research papers is relevant to this debate, and it is timely to bring them together. The absence of introns that are not self-splicing in prokaryotes and several other lines of evidence suggest an ancient eukaryotic origin for these introns, and the subsequent gain and loss of introns appears to be an ongoing process in many organisms. Some introns are now functionally important and there have been suggestions that invoke natural selection for the ancient and recent gain of introns, but it is also possible that fixation and loss of introns can occur in the absence of positive selection.

摘要

关于真核生物内含子的进化一直存在着激烈的争论

它们在生命之树的哪个节点出现,来自何处,以及随后它们的丢失和获得模式是怎样的?最近一系列不同的研究论文都与这场争论相关,将它们汇集在一起正逢其时。原核生物中不存在非自我剪接的内含子以及其他一些证据表明这些内含子起源于古老的真核生物,而且内含子随后的获得和丢失在许多生物体中似乎是一个持续的过程。一些内含子现在具有重要的功能,有人提出自然选择导致了内含子在古代和近期的获得,但内含子的固定和丢失也可能在没有正选择的情况下发生。

相似文献

1
The rise and falls of introns.内含子的兴衰
Heredity (Edinb). 2006 Mar;96(3):208-13. doi: 10.1038/sj.hdy.6800791.
2
Intron-rich ancestors.富含内含子的祖先。
Trends Genet. 2006 Sep;22(9):468-71. doi: 10.1016/j.tig.2006.07.002. Epub 2006 Jul 20.
3
The evolution of spliceosomal introns: patterns, puzzles and progress.剪接体内含子的进化:模式、谜题与进展
Nat Rev Genet. 2006 Mar;7(3):211-21. doi: 10.1038/nrg1807.
4
The biology of intron gain and loss.内含子增减的生物学机制。
Trends Genet. 2006 Jan;22(1):16-22. doi: 10.1016/j.tig.2005.10.006. Epub 2005 Nov 14.
5
The evolutionary gain of spliceosomal introns: sequence and phase preferences.剪接体内含子的进化获得:序列和相位偏好
Mol Biol Evol. 2004 Jul;21(7):1252-63. doi: 10.1093/molbev/msh120. Epub 2004 Mar 10.
6
Eukaryotic evolution: early origin of canonical introns.真核生物进化:标准内含子的早期起源
Nature. 2002 Sep 19;419(6904):270. doi: 10.1038/419270a.
7
Intron loss and gain in Drosophila.果蝇中的内含子缺失与获得
Mol Biol Evol. 2007 Dec;24(12):2842-50. doi: 10.1093/molbev/msm235. Epub 2007 Oct 27.
8
Widespread intron loss suggests retrotransposon activity in ancient apicomplexans.广泛的内含子缺失表明古代顶复门生物中存在反转录转座子活性。
Mol Biol Evol. 2007 Sep;24(9):1926-33. doi: 10.1093/molbev/msm102. Epub 2007 May 23.
9
New maximum likelihood estimators for eukaryotic intron evolution.真核生物内含子进化的新最大似然估计量。
PLoS Comput Biol. 2005 Dec;1(7):e79. doi: 10.1371/journal.pcbi.0010079. Epub 2005 Dec 30.
10
Phylogenetically older introns strongly correlate with module boundaries in ancient proteins.在系统发育上更古老的内含子与古代蛋白质中的模块边界密切相关。
Genome Res. 2003 Jun;13(6A):1155-7. doi: 10.1101/gr.1008203. Epub 2003 May 12.

引用本文的文献

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Purifying selection against spurious splicing signals contributes to the base composition evolution of the polypyrimidine tract.净化选择可消除假剪接信号,从而导致多嘧啶区碱基组成的进化。
J Evol Biol. 2023 Sep;36(9):1295-1312. doi: 10.1111/jeb.14205. Epub 2023 Aug 11.
2
Intronic variants in inborn errors of metabolism: Beyond the exome.先天性代谢缺陷中的内含子变异:外显子之外
Front Genet. 2022 Dec 6;13:1031495. doi: 10.3389/fgene.2022.1031495. eCollection 2022.
3
Modeling one thousand intron length distributions with fitild.
使用 fitild 对一千个内含子长度分布进行建模。
Bioinformatics. 2018 Oct 1;34(19):3258-3264. doi: 10.1093/bioinformatics/bty353.
4
Evolution of the Exon-Intron Structure in Ciliate Genomes.纤毛虫基因组中外显子-内含子结构的演变
PLoS One. 2016 Sep 7;11(9):e0161476. doi: 10.1371/journal.pone.0161476. eCollection 2016.
5
Convergent Evolution of Fern-Specific Mitochondrial Group II Intron atp1i361g2 and Its Ancient Source Paralogue rps3i249g2 and Independent Losses of Intron and RNA Editing among Pteridaceae.蕨类植物特异性线粒体II组内含子atp1i361g2及其古老源旁系同源物rps3i249g2的趋同进化以及凤尾蕨科中内含子和RNA编辑的独立丢失
Genome Biol Evol. 2016 Aug 29;8(8):2505-19. doi: 10.1093/gbe/evw173.
6
Characterization of newly gained introns in Daphnia populations.水蚤种群中新获得内含子的特征分析。
Genome Biol Evol. 2014 Aug 14;6(9):2218-34. doi: 10.1093/gbe/evu174.
7
Phyletic distribution of fatty acid-binding protein genes.脂肪酸结合蛋白基因的系统发生分布。
PLoS One. 2013 Oct 14;8(10):e77636. doi: 10.1371/journal.pone.0077636. eCollection 2013.
8
Mechanisms of intron loss and gain in the fission yeast Schizosaccharomyces.有丝分裂酵母 Schizosaccharomyces 中内含子丢失和获得的机制。
PLoS One. 2013 Apr 17;8(4):e61683. doi: 10.1371/journal.pone.0061683. Print 2013.
9
Transposon-derived and satellite-derived repetitive sequences play distinct functional roles in Mammalian intron size expansion.转座子衍生和卫星衍生的重复序列在哺乳动物内含子大小扩张中发挥不同的功能作用。
Evol Bioinform Online. 2012;8:301-19. doi: 10.4137/EBO.S9758. Epub 2012 Jun 19.
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Evolutionary genomics of Colias Phosphoglucose Isomerase (PGI) introns.Colias 磷酸葡萄糖异构酶(PGI)内含子的进化基因组学。
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