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皮肤癣菌絮状表皮癣菌线粒体基因组的完整DNA序列。

The complete DNA sequence of the mitochondrial genome of the dermatophyte fungus Epidermophyton floccosum.

作者信息

Tambor José Humberto M, Guedes Raquel F, Nobrega Marina P, Nobrega Francisco G

机构信息

Instituto de Ciências Biomédicas, Departamento de Microbiologia, Universidade de São Paulo, Av. Prof. Lineu Prestes, 1374, Ed. Biomédicas II, Cidade Universitária, CEP 05508-900, São Paulo, Brazil.

出版信息

Curr Genet. 2006 May;49(5):302-8. doi: 10.1007/s00294-006-0057-2. Epub 2006 Feb 1.

Abstract

We report here the complete nucleotide sequence of the 30.9-kb mitochondrial genome of the dermatophyte fungus Epidermophyton floccosum. All genes are encoded on the same DNA strand and include seven subunits of the reduced nicotinamide adenine dinucleotide ubiquinone oxireductase (nad1, nad2, nad3, nad4, nad4L, nad5, and nad6), three subunits of cytochrome oxidase (cox1, cox2, and cox3), apocytochrome b (cob), three subunits of ATP synthase (atp6, atp8, and atp9), the small and large ribosomal RNAs (rns and rnl), and 25 tRNAs. A ribosomal protein gene (rps5) is present as an intronic ORF in the large ribosomal subunit. The genes coding for cob and cox1 carry one intron and nad5 carries two introns with ORFs. The mtDNA of E. floccosum has the same gene order as Trichophyton rubrum mtDNA, with the exception of some tRNA genes. Maximum likelihood phylogenetic analysis confirms T. rubrum as a close relative of E. floccosum. This is the first complete mitochondrial sequence of a species of the order Onygenales. This sequence is available under GenBank accession number AY916130.

摘要

我们在此报告絮状表皮癣菌这种皮肤癣菌30.9 kb线粒体基因组的完整核苷酸序列。所有基因均编码于同一条DNA链上,包括还原型烟酰胺腺嘌呤二核苷酸泛醌氧化还原酶的七个亚基(nad1、nad2、nad3、nad4、nad4L、nad5和nad6)、细胞色素氧化酶的三个亚基(cox1、cox2和cox3)、细胞色素b(cob)、ATP合酶的三个亚基(atp6、atp8和atp9)、小核糖体RNA和大核糖体RNA(rns和rnl),以及25个tRNA。一个核糖体蛋白基因(rps5)作为内含子开放阅读框存在于大核糖体亚基中。编码cob和cox1的基因带有一个内含子,nad5带有两个带有开放阅读框的内含子。絮状表皮癣菌的线粒体DNA与红色毛癣菌的线粒体DNA具有相同的基因顺序,但一些tRNA基因除外。最大似然系统发育分析证实红色毛癣菌是絮状表皮癣菌的近亲。这是爪甲团囊菌目一个物种的首个完整线粒体序列。该序列可在GenBank登录号AY916130下获取。

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