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巨大基因组中的长重复序列:大垫尖翅蝗中的微卫星位点

Long repeats in a huge genome: microsatellite loci in the grasshopper Chorthippus biguttulus.

作者信息

Ustinova Jana, Achmann Roland, Cremer Sylvia, Mayer Frieder

机构信息

Institute of Zoology II, University of Erlangen, Staudtstrasse 5, Erlangen, D-91058, Germany.

出版信息

J Mol Evol. 2006 Feb;62(2):158-67. doi: 10.1007/s00239-005-0022-6. Epub 2006 Feb 10.

DOI:10.1007/s00239-005-0022-6
PMID:16474983
Abstract

It is commonly believed that both the average length and the frequency of microsatellites correlate with genome size. We have estimated the frequency and the average length for 69 perfect dinucleotide microsatellites in an insect with an exceptionally large genome: Chorthippus biguttulus (Orthoptera, Acrididae). Dinucleotide microsatellites are not more frequent in C. biguttulus, but repeat arrays are 1.4 to 2 times longer than in other insect species. The average repeat number in C. biguttulus lies in the range of higher vertebrates. Natural populations are highly variable. At least 30 alleles per locus were found and the expected heterozygosity is above 0.95 at all three loci studied. In contrast, the observed heterozygosity is much lower (< or = 0.51), which could be caused by long null alleles.

摘要

人们普遍认为,微卫星的平均长度和频率都与基因组大小相关。我们已经估算了一种具有超大基因组的昆虫——大垫尖翅蝗(直翅目,蝗科)中69个完美二核苷酸微卫星的频率和平均长度。二核苷酸微卫星在大垫尖翅蝗中出现的频率并不更高,但重复序列阵列比其他昆虫物种中的长1.4至2倍。大垫尖翅蝗的平均重复次数处于高等脊椎动物的范围内。自然种群具有高度变异性。在所研究的所有三个位点上,每个位点至少发现了30个等位基因,预期杂合度高于0.95。相比之下,观察到的杂合度要低得多(≤0.51),这可能是由长的无效等位基因导致的。

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本文引用的文献

1
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Fungal Genet Biol. 2004 Nov;41(11):1025-36. doi: 10.1016/j.fgb.2004.08.004.
2
Two distinct modes of microsatellite mutation processes: evidence from the complete genomic sequences of nine species.微卫星突变过程的两种不同模式:来自九个物种完整基因组序列的证据。
Genome Res. 2003 Oct;13(10):2242-51. doi: 10.1101/gr.1416703.
3
Genomic instability induced by mutations in Saccharomyces cerevisiae POL1.酿酒酵母POL1突变诱导的基因组不稳定
塞内加尔鳎基因组中重复 DNA 的综合遗传图谱显示 Rex 转座子位于一个原始性染色体中。
Sci Rep. 2019 Nov 20;9(1):17146. doi: 10.1038/s41598-019-53673-6.
4
High-throughput sequencing and graph-based cluster analysis facilitate microsatellite development from a highly complex genome.高通量测序和基于图谱的聚类分析有助于从高度复杂的基因组中开发微卫星。
Ecol Evol. 2016 Jul 22;6(16):5718-27. doi: 10.1002/ece3.2305. eCollection 2016 Aug.
5
Next generation sequencing and FISH reveal uneven and nonrandom microsatellite distribution in two grasshopper genomes.新一代测序和荧光原位杂交揭示了两种蝗虫基因组中微卫星分布不均匀且非随机。
Chromosoma. 2015 Jun;124(2):221-34. doi: 10.1007/s00412-014-0492-7. Epub 2014 Nov 12.
6
Microsatellite organization in the grasshopper Abracris flavolineata (Orthoptera: Acrididae) revealed by FISH mapping: remarkable spreading in the A and B chromosomes.荧光原位杂交图谱揭示的黄线异角蝗(直翅目:蝗科)微卫星序列组织:在A染色体和B染色体上显著扩展
PLoS One. 2014 May 28;9(5):e97956. doi: 10.1371/journal.pone.0097956. eCollection 2014.
7
Mining non-model genomic libraries for microsatellites: BAC versus EST libraries and the generation of allelic richness.非模式基因组文库中小卫星的挖掘:BAC 文库与 EST 文库以及等位基因丰富度的产生。
BMC Genomics. 2010 Jul 12;11:428. doi: 10.1186/1471-2164-11-428.
8
Mutational dynamics of microsatellites.微卫星的突变动态。
Mol Biotechnol. 2010 Mar;44(3):250-66. doi: 10.1007/s12033-009-9230-4.
9
The evolution of genome size in ants.蚂蚁基因组大小的演变
BMC Evol Biol. 2008 Feb 26;8:64. doi: 10.1186/1471-2148-8-64.
10
Patterned sequence in the transcriptome of vascular plants.维管植物转录组中的模式序列。
BMC Genomics. 2007 Jun 15;8:173. doi: 10.1186/1471-2164-8-173.
Genetics. 2003 Sep;165(1):65-81. doi: 10.1093/genetics/165.1.65.
4
The relationship between microsatellite slippage mutation rate and the number of repeat units.微卫星滑动突变率与重复单元数量之间的关系。
Mol Biol Evol. 2003 Dec;20(12):2123-31. doi: 10.1093/molbev/msg228. Epub 2003 Aug 29.
5
Likelihood-based estimation of microsatellite mutation rates.基于似然性的微卫星突变率估计。
Genetics. 2003 Jun;164(2):781-7. doi: 10.1093/genetics/164.2.781.
6
Dinucleotide repeats in the Drosophila and human genomes have complex, length-dependent mutation processes.果蝇和人类基因组中的二核苷酸重复序列具有复杂的、长度依赖性的突变过程。
Mol Biol Evol. 2003 May;20(5):715-25. doi: 10.1093/molbev/msg084. Epub 2003 Apr 2.
7
Isolation of novel microsatellite loci in the Rocky Mountain apollo butterfly, Parnassius smintheus.落基山阿波罗绢蝶(Parnassius smintheus)中新微卫星位点的分离。
Hereditas. 2002;136(3):247-50. doi: 10.1034/j.1601-5223.2002.1360311.x.
8
Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review.微卫星:基因组分布、假定功能及突变机制:综述
Mol Ecol. 2002 Dec;11(12):2453-65. doi: 10.1046/j.1365-294x.2002.01643.x.
9
Genome size and the accumulation of simple sequence repeats: implications of new data from genome sequencing projects.基因组大小与简单序列重复序列的积累:来自基因组测序项目新数据的启示
Genetica. 2002 May;115(1):93-103. doi: 10.1023/a:1016028332006.
10
Mismatch repair-driven mutational bias in D. melanogaster.黑腹果蝇中错配修复驱动的突变偏向性。
Mol Cell. 2002 Jul;10(1):199-205. doi: 10.1016/s1097-2765(02)00575-0.