Linnanto Juha, Korppi-Tommola Jouko
Physical Chemistry Laboratory, University of Jyväskylä, P.O. Box 35, FIN-40014, Finland.
Phys Chem Chem Phys. 2006 Feb 14;8(6):663-87. doi: 10.1039/b513086g. Epub 2005 Dec 15.
The present review describes the use of quantum chemical methods in estimation of structures and electronic transition energies of photosynthetic pigments in vacuum, in solution and imbedded in proteins. Monomeric Mg-porphyrins, chlorophylls and bacteriochlorophylls and their solvent 1:1 and 1:2 complexes were studied. Calculations were performed for Mg-porphyrin, Mg-chlorin, Mg-bacteriochlorin, mesochlorophyll a, chlorophylls a, b, c(1), c(2), c(3), d and bacteriochlorophylls a, b, c, d, e, f, g, h, plus several homologues. Geometries were optimised with PM3, PM3/CISD, PM5, ab initio HF (6-31G*/6-311G**) and density functional B3LYP (6-31G*/6-311G**) methods. Spectroscopic transition energies were calculated with ZINDO/S CIS, PM3 CIS, PM3 CISD, ab initio CIS, time-dependent HF and time-dependent B3LYP methods. Estimates for experimental transition energies were obtained from linear correlations of the calculated transition energies of 1:1 solvent complexes against experimentally recorded solution energies (scaling). According to the calculations in five-coordinated solvent complexes the magnesium atom lies out of the porphyrin plane, while in six-coordinated complexes the porphyrin is nearly planar. Charge densities on magnesium and nitrogen atoms were strongly dependent on the computational method deployed. Several dark states of low oscillator strength below the main Soret band were predicted for solvent complexes and chlorophylls and bacteriochlorophylls in protein environment. Such states, though not yet identified experimentally, might serve as intermediate states for excitation energy transfer in photosynthetic complexes. Q(y), Q(x) and Soret transition energies were found to depend on the orientation of the acetyl group and external pressure. A method to estimate site energies and dimeric interaction energies and to simulate absorption and CD spectra of photosynthetic complexes is described. Simulations for the light harvesting complexes Rhodospirillum molischianum, chlorosomes of Chlorobium tepidum and Chloroflexus aurantiacus, and LHC-II of Spinacia oleracea are presented as examples.
本综述描述了量子化学方法在估算光合色素在真空、溶液以及嵌入蛋白质中的结构和电子跃迁能方面的应用。研究了单体镁卟啉、叶绿素和细菌叶绿素及其1:1和1:2溶剂配合物。对镁卟啉、镁二氢卟吩、镁细菌二氢卟吩、中位叶绿素a、叶绿素a、b、c(1)、c(2)、c(3)、d以及细菌叶绿素a、b、c、d、e、f、g、h,外加几种同系物进行了计算。采用PM3、PM3/CISD、PM5、从头算HF(6-31G*/6-311G**)和密度泛函B3LYP(6-31G*/6-311G**)方法对几何结构进行了优化。用ZINDO/S CIS、PM3 CIS、PM3 CISD、从头算CIS、含时HF和含时B3LYP方法计算了光谱跃迁能。通过1:1溶剂配合物的计算跃迁能与实验记录的溶液能的线性相关性(标度)获得了实验跃迁能的估计值。根据对五配位溶剂配合物的计算,镁原子位于卟啉平面之外,而在六配位配合物中卟啉几乎是平面的。镁和氮原子上的电荷密度强烈依赖于所采用的计算方法。对于溶剂配合物以及蛋白质环境中的叶绿素和细菌叶绿素,预测了低于主要Soret带的几个低振子强度的暗态。这些态虽然尚未通过实验鉴定,但可能作为光合复合物中激发能转移的中间态。发现Q(y)、Q(x)和Soret跃迁能取决于乙酰基的取向和外部压力。描述了一种估算位点能和二聚体相互作用能以及模拟光合复合物吸收光谱和圆二色光谱的方法。给出了对嗜糖红螺菌的光捕获复合物、嗜热绿菌和橙绿藻的叶绿体以及菠菜的LHC-II的模拟示例。