Zhan Lixin, Chen Jeff Z Y, Liu Wing-Ki
Department of Physics, University of Waterloo, Waterloo, Ontario, Canada N2L 3G1.
Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jan;73(1 Pt 2):015701. doi: 10.1103/PhysRevE.73.015701. Epub 2006 Jan 24.
We propose a global optimization procedure, basin paving, which is based on the combination of the optimization strategies behind basin hopping and energy landscape paving. As an example, we describe its application in the protein structure prediction by examining two well-studied peptides, where we have found lower potential energy minima than previously located. We also compare the statistics of the searching trajectories produced by basin paving, basin hopping, and energy landscape paving.
我们提出了一种全局优化方法——盆地铺砌法,它基于盆地跳跃和能量景观铺砌背后的优化策略的结合。作为一个例子,我们通过研究两种经过充分研究的肽来描述其在蛋白质结构预测中的应用,在这个过程中我们发现了比之前找到的更低的势能最小值。我们还比较了盆地铺砌法、盆地跳跃法和能量景观铺砌法所产生的搜索轨迹的统计数据。