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本文引用的文献

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Inbreeding and Linkage.近亲繁殖与连锁
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Quantitative trait locus analysis using recombinant inbred intercrosses: theoretical and empirical considerations.利用重组近交系间杂交进行数量性状基因座分析:理论与实证考量
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The map expansion obtained with recombinant inbred strains and intermated recombinant inbred populations for finite generation designs.利用重组自交系和有限世代设计的互交重组自交群体获得的图谱扩展。
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The Collaborative Cross, a community resource for the genetic analysis of complex traits.协作杂交系,一种用于复杂性状遗传分析的群体资源。
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On the determination of recombination rates in intermated recombinant inbred populations.关于在杂交重组近交群体中重组率的测定
Genetics. 2003 Jun;164(2):741-5. doi: 10.1093/genetics/164.2.741.
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MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations.MAPMAKER:一个用于构建实验群体和自然群体初级遗传连锁图谱的交互式计算机程序包。
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使用重组近交系进行连锁分析的双位点和三位点测试。

Two- and three-locus tests for linkage analysis using recombinant inbred lines.

作者信息

Martin Olivier C, Hospital Frédéric

机构信息

INRA, UMR de Génétique Végétale, Ferme du Moulon, 91190 Gif-sur-Yvette, France.

出版信息

Genetics. 2006 May;173(1):451-9. doi: 10.1534/genetics.105.047175. Epub 2006 Feb 19.

DOI:10.1534/genetics.105.047175
PMID:16489236
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1461428/
Abstract

We consider fixed recombinant inbred lines (RILs) derived either by selfing or by full-sib mating; when applicable, we also consider intermated recombinant inbreds (IRIs). First, we show that the usual estimate of recombination fraction based on RIL data is biased, and we provide an estimate where the major part of that bias is removed. Second, we derive simple formulas to compute the frequencies of genotypes at three loci in RILs. We describe the nonindependence of multiple recombinations arising in RIL recombination data even though there may be no interference in each meiosis. Finally, we give formulas for interference tests, gene mapping, or QTL detection in RIL populations.

摘要

我们考虑通过自交或全同胞交配产生的固定重组近交系(RILs);在适用的情况下,我们也考虑互交重组近交系(IRIs)。首先,我们表明基于RIL数据对重组率的常规估计存在偏差,并且我们提供了一种估计方法,其中大部分偏差被消除。其次,我们推导了计算RILs中三个位点基因型频率的简单公式。我们描述了RIL重组数据中出现的多重重组的非独立性,即使在每个减数分裂中可能不存在干涉。最后,我们给出了RIL群体中干涉检验、基因定位或QTL检测的公式。