Kamiya Katsumasa, Boero Mauro, Shiraishi Kenji, Oshiyama Atsushi
Institute of Physics and Center for Computational Sciences, University of Tsukuba, Tennodai 1-1-1, Tsukuba, Ibaraki 305-8571, Japan.
J Phys Chem B. 2006 Mar 9;110(9):4443-50. doi: 10.1021/jp056250p.
Density functional based simulations, performed on polyglycine containing an enol peptide group [-C(OH)N-] which is a structural isomer of a keto form [-CONH-], show that in the enol-to-keto tautomeric reaction, the enol peptide group is less stable than the keto form, and that the enol-to-keto tautomerism is characterized by a cis/trans isomerization of the C-N peptide bond. The rate-limiting step in the cis/trans isomerization is a hydrogen migration from O to N atoms in the peptide group with a transition state consisting of a four-membered ring in the cis configuration. An analysis of the cis/trans isomerization pathway shows that the mechanisms for the cis/trans isomerization are essentially different between the enol and keto forms.
基于密度泛函的模拟对含有烯醇肽基[-C(OH)N-](它是酮式[-CONH-]的结构异构体)的聚甘氨酸进行,结果表明在烯醇-酮互变异构反应中,烯醇肽基比酮式不稳定,且烯醇-酮互变异构的特征是C-N肽键的顺/反异构化。顺/反异构化中的限速步骤是氢从肽基中的O原子迁移到N原子,其过渡态由顺式构型的四元环组成。对顺/反异构化途径的分析表明,烯醇式和酮式之间顺/反异构化的机制本质上不同。