Suppr超能文献

来自嗜氧超嗜热古菌火球菌K1的硫氧还蛋白过氧化物酶的结晶及初步X射线衍射分析。

Crystallization and preliminary X-ray diffraction analysis of thioredoxin peroxidase from the aerobic hyperthermophilic archaeon Aeropyrum pernix K1.

作者信息

Nakamura Tsutomu, Matsumura Hiroyoshi, Inoue Tsuyoshi, Kai Yasushi, Uegaki Koichi, Hagihara Yoshihisa, Ataka Mitsuo, Ishikawa Kazuhiko

机构信息

National Institute of Advanced Industrial Science and Technology, Ikeda, Osaka 563-8577, Japan.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Mar 1;61(Pt 3):323-5. doi: 10.1107/S1744309105005294. Epub 2005 Feb 24.

Abstract

Thioredoxin peroxidase is a member of the peroxiredoxin family and plays a dominant role in a hydrogen peroxide metabolism. A recombinant form of the hyperthermostable thioredoxin peroxidase from the aerobic hyperthermophilic archaeon Aeropyrum pernix K1, a polypeptide consisting of 250 amino acids, was purified. The C207S mutant protein was crystallized by the hanging-drop vapour-diffusion method using potassium sodium tartrate as the precipitant at 298 K. Diffraction data were collected and processed to 2.7 A resolution. The crystal belongs to space group P1, with unit-cell parameters a = 126.2, b = 126.3, c = 213.7 A, alpha = 80.4, beta = 80.3, gamma = 70.7 degrees. Calculation of the self-rotation function showed that the protein quaternary structure includes a fivefold axis and five twofold axes.

摘要

硫氧还蛋白过氧化物酶是过氧化物酶家族的一员,在过氧化氢代谢中起主导作用。从需氧嗜热古菌嗜热栖热菌K1中纯化出一种重组形式的超耐热硫氧还蛋白过氧化物酶,它是一种由250个氨基酸组成的多肽。使用酒石酸钠钾作为沉淀剂,通过悬滴气相扩散法在298 K下使C207S突变体蛋白结晶。收集衍射数据并处理至2.7 Å分辨率。该晶体属于空间群P1,晶胞参数a = 126.2,b = 126.3,c = 213.7 Å,α = 80.4,β = 80.3,γ = 70.7°。自旋转函数计算表明,该蛋白质四级结构包括一个五重轴和五个二重轴。

相似文献

1
Crystallization and preliminary X-ray diffraction analysis of thioredoxin peroxidase from the aerobic hyperthermophilic archaeon Aeropyrum pernix K1.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Mar 1;61(Pt 3):323-5. doi: 10.1107/S1744309105005294. Epub 2005 Feb 24.
2
Crystallization and preliminary X-ray diffraction studies of a protein disulfide oxidoreductase from Aeropyrum pernix K1.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Mar 1;61(Pt 3):335-6. doi: 10.1107/S1744309105004057.
4
Characterization of novel hexadecameric thioredoxin peroxidase from Aeropyrum pernix K1.
J Biol Chem. 2003 Jun 27;278(26):24174-80. doi: 10.1074/jbc.M300618200. Epub 2003 Apr 21.
5
Overexpression, purification and crystallization of tyrosyl-tRNA synthetase from the hyperthermophilic archaeon Aeropyrum pernix K1.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Nov 1;61(Pt 11):1003-5. doi: 10.1107/S1744309105033245. Epub 2005 Oct 25.
6
Crystallization and preliminary X-ray analysis of a dye-linked D-lactate dehydrogenase from the aerobic hyperthermophilic archaeon Aeropyrum pernix.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Nov 1;67(Pt 11):1425-7. doi: 10.1107/S1744309111036098. Epub 2011 Oct 27.
7
Crystal structure of an archaeal peroxiredoxin from the aerobic hyperthermophilic crenarchaeon Aeropyrum pernix K1.
J Mol Biol. 2005 Nov 25;354(2):317-29. doi: 10.1016/j.jmb.2005.09.006. Epub 2005 Sep 22.
8
Crystallization and preliminary X-ray diffraction analysis of glutamate dehydrogenase from an aerobic hyperthermophilic archaeon, Aeropyrum pernix K1.
Acta Crystallogr D Biol Crystallogr. 2002 Aug;58(Pt 8):1338-9. doi: 10.1107/s0907444902008478. Epub 2002 Jul 20.
9
Crystallization and preliminary crystallographic analysis of acylamino-acid releasing enzyme from the hyperthermophilic archaeon Aeropyrum pernix.
Acta Crystallogr D Biol Crystallogr. 2002 Jun;58(Pt 6 Pt 2):1054-5. doi: 10.1107/s0907444902005875. Epub 2002 May 29.
10
Crystallization and preliminary X-ray analysis of a novel dye-linked L-proline dehydrogenase from the aerobic hyperthermophilic archaeon Aeropyrum pernix.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Nov 1;66(Pt 11):1508-10. doi: 10.1107/S1744309110036808. Epub 2010 Oct 29.

引用本文的文献

1
Disassembly of the ring-type decameric structure of peroxiredoxin from Aeropyrum pernix K1 by amino acid mutation.
Protein Sci. 2020 May;29(5):1138-1147. doi: 10.1002/pro.3837. Epub 2020 Feb 12.
2
Structure of peroxiredoxin from the anaerobic hyperthermophilic archaeon Pyrococcus horikoshii.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jul;69(Pt 7):719-22. doi: 10.1107/S1744309113014036. Epub 2013 Jun 27.
3
Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate.
Proc Natl Acad Sci U S A. 2008 Apr 29;105(17):6238-42. doi: 10.1073/pnas.0709822105. Epub 2008 Apr 24.

本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
3
Peroxiredoxin evolution and the regulation of hydrogen peroxide signaling.
Science. 2003 Apr 25;300(5619):650-3. doi: 10.1126/science.1080405.
4
Characterization of novel hexadecameric thioredoxin peroxidase from Aeropyrum pernix K1.
J Biol Chem. 2003 Jun 27;278(26):24174-80. doi: 10.1074/jbc.M300618200. Epub 2003 Apr 21.
5
Structure, mechanism and regulation of peroxiredoxins.
Trends Biochem Sci. 2003 Jan;28(1):32-40. doi: 10.1016/s0968-0004(02)00003-8.
6
Identification and characterization of thioredoxin and thioredoxin reductase from Aeropyrum pernix K1.
Eur J Biochem. 2002 Nov;269(22):5423-30. doi: 10.1046/j.1432-1033.2002.03231.x.
7
Dimers to doughnuts: redox-sensitive oligomerization of 2-cysteine peroxiredoxins.
Biochemistry. 2002 Apr 30;41(17):5493-504. doi: 10.1021/bi012173m.
8
Peroxiredoxin, a novel family of peroxidases.
IUBMB Life. 2001 Jul;52(1-2):35-41. doi: 10.1080/15216540252774748.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验