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与病毒肽和自身肽复合的人类主要组织相容性抗原HLA-B*2703的纯化、结晶及初步X射线衍射分析。

Purification, crystallization and preliminary X-ray diffraction analysis of the human major histocompatibility antigen HLA-B*2703 complexed with a viral peptide and with a self-peptide.

作者信息

Loll Bernhard, Zawacka Anna, Biesiadka Jacek, Rückert Christine, Volz Armin, Saenger Wolfram, Uchanska-Ziegler Barbara, Ziegler Andreas

机构信息

Institut für Chemie/Kristallographie, Freie Universität Berlin, Takustrasse 6, 14195 Berlin, Germany.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Apr 1;61(Pt 4):372-4. doi: 10.1107/S1744309105007438. Epub 2005 Mar 12.

Abstract

The product of the human leukocyte antigen (HLA) gene HLA-B2703 differs from that of the prototypical subtype HLA-B2705 by a single amino acid at heavy-chain residue 59 that is involved in anchoring the peptide N-terminus within the A pocket of the molecule. Two B2703-peptide complexes were crystallized using the hanging-drop vapour-diffusion method using PEG 8000 as a precipitant. The crystals belong to space group P2(1) (pVIPR peptide) or P2(1)2(1)2(1) (pLMP2 peptide). Data sets were collected to 1.55 A (B2703-pVIPR) or 2.0 A (B2703-pLMP2) resolution using synchrotron radiation. With B2705-pVIPR as a search model, a clear molecular-replacement solution was found for both B*2703 complexes.

摘要

人类白细胞抗原(HLA)基因HLA - B2703的产物与原型亚型HLA - B2705的产物在重链残基59处有一个氨基酸不同,该残基参与将肽的N端锚定在分子的A口袋内。使用PEG 8000作为沉淀剂,通过悬滴气相扩散法使两种B2703 - 肽复合物结晶。晶体属于空间群P2(1)(pVIPR肽)或P2(1)2(1)2(1)(pLMP2肽)。使用同步辐射将数据集收集到1.55 Å(B2703 - pVIPR)或2.0 Å(B2703 - pLMP2)分辨率。以B2705 - pVIPR作为搜索模型,发现两种B*2703复合物都有清晰的分子置换解决方案。

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引用本文的文献

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3
Preliminary X-ray diffraction analysis of crystals from the recombinantly expressed human major histocompatibility antigen HLA-B*2704 in complex with a viral peptide and with a self-peptide.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Oct 1;61(Pt 10):939-41. doi: 10.1107/S1744309105029234. Epub 2005 Sep 30.

本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Thermodynamic and structural equivalence of two HLA-B27 subtypes complexed with a self-peptide.
J Mol Biol. 2005 Mar 11;346(5):1367-79. doi: 10.1016/j.jmb.2004.12.047. Epub 2005 Jan 28.
3
Allele-dependent similarity between viral and self-peptide presentation by HLA-B27 subtypes.
J Biol Chem. 2005 Jan 28;280(4):2962-71. doi: 10.1074/jbc.M410807200. Epub 2004 Nov 10.
4
Natural HLA class I polymorphism controls the pathway of antigen presentation and susceptibility to viral evasion.
J Exp Med. 2004 Jul 5;200(1):13-24. doi: 10.1084/jem.20031680. Epub 2004 Jun 28.
6
HLA-B27: a registry of constitutive peptide ligands.
Tissue Antigens. 2004 May;63(5):424-45. doi: 10.1111/j.0001-2815.2004.00220.x.
7
Likelihood-enhanced fast rotation functions.
Acta Crystallogr D Biol Crystallogr. 2004 Mar;60(Pt 3):432-8. doi: 10.1107/S0907444903028956. Epub 2004 Feb 25.
8
Dual, HLA-B27 subtype-dependent conformation of a self-peptide.
J Exp Med. 2004 Jan 19;199(2):271-81. doi: 10.1084/jem.20031690.

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