Dharkar Poorva D, Anuradha P, Gaikwad Sushama M, Suresh C G
Division of Biochemical Sciences, National Chemical Laboratory, Pune 411008, India.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Mar 1;62(Pt 3):205-9. doi: 10.1107/S174430910600265X. Epub 2006 Feb 10.
A lectin from Trichosanthes dioica seeds has been purified and crystallized using 25%(w/v) PEG 2K MME, 0.2 M ammonium acetate, 0.1 M Tris-HCl pH 8.5 and 50 microl 0.5%(w/v) n-octyl beta-D-glucopyranoside as thick needles belonging to hexagonal space group P6(4). Unit-cell parameters were a = b = 167.54, c = 77.42 A. The crystals diffracted to a Bragg spacing of 2.8 A. Both the structures of abrin-a and T. kirilowii lectin could be used as a model in structure determination using the molecular-replacement method; however, T. kirilowii lectin coordinates gave better values of reliability and correlation parameters. The thermal, chemical and pH stability of this lectin have also been studied. When heated, its haemagglutination activity remained unaffected up to 363 K. Other stability studies show that 4 M guanidinium hydrochloride (Gdn-HCl) initiates unfolding and that the protein is completely unfolded at 6 M Gdn-HCl. Treatment with urea resulted in a total loss of activity at higher concentrations of denaturant with no major structural changes. The protein remained stable over a wide pH range, from pH 6 to pH 12, except for partial unfolding at extremely alkaline pH. The role of disulfide bonds in the protein stability was found to be insignificant. Rayleigh light-scattering studies showed no molecular aggregation in any of the extreme treated conditions. The unusual stability of this lectin resembles that of type II ribosome-inactivating proteins (type II RIPs), which is also supported by structure determination. The structural features observed in a preliminary electron-density map were compared with the other two available Trichosanthes lectin structures.
已使用25%(w/v)聚乙二醇2K甲醚、0.2M醋酸铵、0.1M Tris-HCl(pH 8.5)和50微升0.5%(w/v)正辛基-β-D-吡喃葡萄糖苷,将来自栝楼种子的一种凝集素纯化并结晶为属于六方空间群P6(4)的粗针状晶体。晶胞参数为a = b = 167.54,c = 77.42 Å。这些晶体的衍射极限为2.8 Å的布拉格间距。相思子毒素-a和栝楼凝集素的结构均可作为分子置换法结构测定的模型;然而,栝楼凝集素的坐标给出了更好的可靠性和相关性参数值。还研究了这种凝集素的热稳定性、化学稳定性和pH稳定性。加热时,其血凝活性在高达363K时仍不受影响。其他稳定性研究表明,4M盐酸胍(Gdn-HCl)引发解折叠,并且该蛋白在6M Gdn-HCl时完全解折叠。用尿素处理在较高浓度变性剂下导致活性完全丧失,且无重大结构变化。该蛋白在较宽的pH范围内(pH 6至pH 12)保持稳定,除了在极强碱性pH下部分解折叠。发现二硫键在蛋白稳定性中的作用不显著。瑞利光散射研究表明在任何极端处理条件下均无分子聚集。这种凝集素不同寻常的稳定性类似于II型核糖体失活蛋白(II型RIPs)的稳定性,这也得到了结构测定的支持。将初步电子密度图中观察到的结构特征与其他两种可用的栝楼凝集素结构进行了比较。