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随机纽结的标度行为。

Scaling behavior of random knots.

作者信息

Dobay Akos, Dubochet Jacques, Millett Kenneth, Sottas Pierre-Edouard, Stasiak Andrzej

机构信息

Laboratory of Ultrastructural Analysis, University of Lausanne, 1015 Lausanne, Switzerland; Department of Mathematics, University of California, Santa Barbara, CA 93106; and Center for Neuromimetic Systems, Swiss Federal Institute of Technology, 1015 Lausanne, Switzerland.

出版信息

Proc Natl Acad Sci U S A. 2003 May 13;100(10):5611-5. doi: 10.1073/pnas.0330884100. Epub 2003 Apr 29.

DOI:10.1073/pnas.0330884100
PMID:16576754
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC156249/
Abstract

Using numerical simulations we investigate how overall dimensions of random knots scale with their length. We demonstrate that when closed non-self-avoiding random trajectories are divided into groups consisting of individual knot types, then each such group shows the scaling exponent of approximately 0.588 that is typical for self-avoiding walks. However, when all generated knots are grouped together, their scaling exponent becomes equal to 0.5 (as in non-self-avoiding random walks). We explain here this apparent paradox. We introduce the notion of the equilibrium length of individual types of knots and show its correlation with the length of ideal geometric representations of knots. We also demonstrate that overall dimensions of random knots with a given chain length follow the same order as dimensions of ideal geometric representations of knots.

摘要

通过数值模拟,我们研究了随机纽结的整体尺寸如何随其长度缩放。我们证明,当封闭的非自回避随机轨迹被分成由单个纽结类型组成的组时,那么每个这样的组都显示出约为0.588的缩放指数,这是自回避行走的典型指数。然而,当所有生成的纽结被归为一组时,它们的缩放指数变为等于0.5(如同在非自回避随机行走中一样)。我们在此解释这一明显的悖论。我们引入了单个纽结类型的平衡长度的概念,并展示了它与纽结理想几何表示长度的相关性。我们还证明,具有给定链长的随机纽结的整体尺寸遵循与纽结理想几何表示尺寸相同的顺序。

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本文引用的文献

1
Critical exponents for random knots.随机纽结的临界指数。
Phys Rev Lett. 2000 Oct 30;85(18):3858-61. doi: 10.1103/PhysRevLett.85.3858.
2
Tightness of random knotting.随机打结的紧密度
Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 May;61(5 Pt B):5545-9. doi: 10.1103/physreve.61.5545.
3
A topological invariant to predict the three-dimensional writhe of ideal configurations of knots and links.一种用于预测纽结和链环理想构型的三维缠绕数的拓扑不变量。
Proc Natl Acad Sci U S A. 2000 Apr 11;97(8):3795-8. doi: 10.1073/pnas.97.8.3795.
4
Sedimentation and electrophoretic migration of DNA knots and catenanes.DNA 纽结和连环体的沉降与电泳迁移
J Mol Biol. 1998 Apr 24;278(1):1-3. doi: 10.1006/jmbi.1998.1696.
5
Electrophoretic mobility of DNA knots.DNA 结的电泳迁移率
Nature. 1996 Nov 14;384(6605):122. doi: 10.1038/384122a0.
6
Probability of DNA knotting and the effective diameter of the DNA double helix.DNA打结的概率与DNA双螺旋的有效直径
Proc Natl Acad Sci U S A. 1993 Jun 1;90(11):5307-11. doi: 10.1073/pnas.90.11.5307.
7
Knotting of a DNA chain during ring closure.环状闭合过程中DNA链的打结
Science. 1993 Apr 23;260(5107):533-6. doi: 10.1126/science.8475384.
8
Effect of excluded volume on topological properties of circular DNA.排除体积对环状DNA拓扑性质的影响。
J Biomol Struct Dyn. 1988 Jun;5(6):1173-85. doi: 10.1080/07391102.1988.10506462.
9
Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads.通过使用磁珠对单个DNA分子的弹性进行直接力学测量。
Science. 1992 Nov 13;258(5085):1122-6. doi: 10.1126/science.1439819.