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基于量子力学/分子力学(QM/MM)组合方法的液氨模拟。

Simulations of liquid ammonia based on the combined quantum mechanical/molecular mechanical (QM/MM) approach.

作者信息

Tongraar Anan, Kerdcharoen Teerakiat, Hannongbua Supot

机构信息

School of Chemistry, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima 30000, Thailand.

出版信息

J Phys Chem A. 2006 Apr 13;110(14):4924-9. doi: 10.1021/jp057342h.

Abstract

Two combined quantum mechanics/molecular mechanics (QM/MM) molecular dynamics simulations, namely, HF/MM and B3LYP/MM, have been performed to investigate the local structure and dynamics of liquid ammonia. The most interesting region, a sphere containing a central reference molecule and all its nearest surrounding molecules (first coordination shell), was treated by the Hartree-Fock (HF) and hybrid density functional B3LYP methods, whereas the rest of the system was described by the classical pair potentials. On the basis of both HF and B3LYP methods, it is observed that the hydrogen bonding in this peculiar liquid is weak. The structure and dynamics of this liquid are suggested to be determined by the steric packing effects, rather than by the directional hydrogen bonding interactions. Compared to previous empirical as well as Car-Parrinello (CP) molecular dynamics studies, our QM/MM simulations provide detailed information that is in better agreement with experimental data.

摘要

为了研究液氨的局部结构和动力学,进行了两种量子力学/分子力学(QM/MM)分子动力学模拟,即HF/MM和B3LYP/MM。最有趣的区域,即包含一个中心参考分子及其所有最近邻分子(第一配位层)的球体,采用Hartree-Fock(HF)和混合密度泛函B3LYP方法处理,而系统的其余部分则用经典对势描述。基于HF和B3LYP方法,观察到这种特殊液体中的氢键较弱。这种液体的结构和动力学被认为是由空间堆积效应决定的,而不是由定向氢键相互作用决定的。与以前的经验以及Car-Parrinello(CP)分子动力学研究相比,我们的QM/MM模拟提供了与实验数据更吻合的详细信息。

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