Shimizu-Ibuka Akiko, Morita Yuji, Terada Tohru, Asakura Tomiko, Nakajima Ken-ichiro, Iwata So, Misaka Takumi, Sorimachi Hiroyuki, Arai Soichi, Abe Keiko
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Japan.
J Mol Biol. 2006 May 26;359(1):148-58. doi: 10.1016/j.jmb.2006.03.030. Epub 2006 Mar 29.
Although the majority of sweet compounds are of low molecular mass, several proteins are known to elicit sweet taste responses in humans. The fruit of Curculigo latifolia contains a heterodimeric protein, neoculin, which has both sweetness and a taste-modifying activity that converts sourness to sweetness. Here, we report the crystal structure of neoculin at 2.76A resolution. This is the first well-defined tertiary structure of a taste-modifying protein of this kind. The overall structure is quite similar to those of monocot mannose-binding lectins. However, crucial topological differences are observed in the C-terminal regions of both subunits. In both subunits of neoculin, the C-terminal tails turn up to form loops fixed by inter-subunit disulfide bonds that are not observed in the lectins. Indeed, the corresponding regions of the lectins stretch straight over the surface of another subunit. Such a C-terminal structural feature as is observed in neoculin results in a decrease in subunit-subunit interactions. Moreover, distribution of electrostatic potential on the surface of neoculin is unique and significantly different from those of the lectins, particularly in the basic subunit (NBS). We have found that there is a large cluster composed of six basic residues on the surface of NBS, and speculate that it might be involved in the elicitation of sweetness and/or taste-modifying activity of neoculin. Molecular dynamics simulation based on the crystallography results suggests that neoculin may adopt a widely "open" conformation at acidic pH, while unprotonated neoculin at neutral pH is in a "closed" conformation. Based on these simulations and the generation of a docking model between neoculin and the sweet-taste receptor, T1R2-T1R3, we propose the hypothesis that neoculin is in dynamic equilibrium between open and closed states, and that the addition of an acid shifts the equilibrium to the open state, allowing ligand-receptor interaction.
尽管大多数甜味化合物分子量较低,但已知有几种蛋白质能在人类中引发甜味反应。宽叶仙茅的果实含有一种异源二聚体蛋白——新甜蛋白,它既有甜味,又具有将酸味转化为甜味的味觉修饰活性。在此,我们报告了新甜蛋白在2.76埃分辨率下的晶体结构。这是此类味觉修饰蛋白首个明确的三级结构。其整体结构与单子叶甘露糖结合凝集素颇为相似。然而,在两个亚基的C末端区域观察到了关键的拓扑差异。在新甜蛋白的两个亚基中,C末端尾巴向上翻转形成环,由亚基间二硫键固定,而在凝集素中未观察到这种情况。实际上,凝集素的相应区域在另一个亚基表面呈直线延伸。新甜蛋白中观察到的这种C末端结构特征导致亚基间相互作用减少。此外,新甜蛋白表面的静电势分布独特,与凝集素的静电势分布显著不同,尤其是在碱性亚基(NBS)中。我们发现在NBS表面有一个由六个碱性残基组成的大簇,并推测它可能参与了新甜蛋白的甜味引发和/或味觉修饰活性。基于晶体学结果的分子动力学模拟表明,新甜蛋白在酸性pH下可能采取广泛的“开放”构象,而在中性pH下未质子化的新甜蛋白处于“封闭”构象。基于这些模拟以及新甜蛋白与甜味受体T1R2 - T1R3之间对接模型的生成,我们提出如下假说:新甜蛋白处于开放态和封闭态的动态平衡中,添加酸会使平衡向开放态移动,从而允许配体 - 受体相互作用。