Hoang Trinh X, Marsella Luca, Trovato Antonio, Seno Flavio, Banavar Jayanth R, Maritan Amos
Institute of Physics and Electronics, Vietnamese Academy of Science and Technology, 10 Dao Tan, Hanoi, Vietnam.
Proc Natl Acad Sci U S A. 2006 May 2;103(18):6883-8. doi: 10.1073/pnas.0601824103. Epub 2006 Apr 19.
We show that a framework derived from the common character of globular proteins can be used to understand the design of protein sequences, the behavior of intrinsically unstructured proteins, and the formation of amyloid fibrils in a unified manner. Our studies provide compelling support for the idea that protein native-state structures, the structures adopted by intrinsically unstructured proteins on binding as well as those of amyloid aggregates, all reside in a physical state of matter in which the free energy landscape is sculpted not by the specific sequence of amino acids, but rather by considerations of geometry and symmetry. We elucidate the key role played by sequence design in selecting the structure of choice from the predetermined menu of putative native-state structures.
我们表明,源自球状蛋白质共同特征的一个框架可用于以统一的方式理解蛋白质序列的设计、内在无序蛋白质的行为以及淀粉样纤维的形成。我们的研究为以下观点提供了有力支持:蛋白质的天然态结构、内在无序蛋白质在结合时所采用的结构以及淀粉样聚集体的结构,都处于一种物质的物理状态,在这种状态下,自由能景观并非由氨基酸的特定序列塑造,而是由几何和对称因素决定。我们阐明了序列设计在从预定的假定天然态结构菜单中选择特定结构时所起的关键作用。