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利用DNA微阵列作为全基因组转录组学分析工具研究纺织废水对酿酒酵母的影响。

Effect of textile wastewaters on Saccharomyces cerevisiae using DNA microarray as a tool for genome-wide transcriptomics analysis.

作者信息

Kim Hyun-Ju, Rakwal Randeep, Shibato Junko, Iwahashi Hitoshi, Choi Jang-Seoung, Kim Du-Hyun

机构信息

Human Stress Signal Research Center (HSS), National Institute of Advanced Industrial Science and Technology (AIST), Central 6, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan.

出版信息

Water Res. 2006 May;40(9):1773-82. doi: 10.1016/j.watres.2006.02.037. Epub 2006 Apr 21.

Abstract

Textile mill effluents (TMEs) discharged from the textile industry can be considered as one class of hypothetical toxicants in the environment. To investigate the potential toxicity of TMEs, we applied cDNA microarray technology to examine the genome-wide expression profiles in model eukaryote, Saccharomyces cerevisiae. The results revealed a rich source of genetic information for the yeast cells that were exposed to the untreated and treated TMEs. Among the 5956 valid genes, 275 genes were up-regulated and 40 genes were down-regulated for the untreated TMEs. On the other hand, only 90 genes were up-regulated, and 29 genes were down-regulated upon exposure to the treated TMEs. The changes in gene expression were also confirmed by RT-PCR. The potent up- and down-regulation of genes suggest that yeast cells undergo genome-wide changes in mRNA expression, indicative of a stress response. Additionally, a classification into specific functional gene categories indicated that untreated and even treated TMEs still had toxicity. Especially, the genes related to oxidative stress, such as AHP1, ATX1, GRX1, TRX1 and TRX2, were up-regulated in treated TMEs that can directly reach to surface and ground waters, and sediments.

摘要

纺织工业排放的纺织厂废水(TMEs)可被视为环境中的一类假想毒物。为了研究TMEs的潜在毒性,我们应用cDNA微阵列技术检测了模式真核生物酿酒酵母的全基因组表达谱。结果揭示了暴露于未处理和处理过的TMEs的酵母细胞丰富的遗传信息来源。在5956个有效基因中,未处理的TMEs使275个基因上调,40个基因下调。另一方面,暴露于处理过的TMEs时,只有90个基因上调,29个基因下调。基因表达的变化也通过RT-PCR得到证实。基因的强烈上调和下调表明酵母细胞在mRNA表达上经历了全基因组变化,这表明存在应激反应。此外,对特定功能基因类别的分类表明,未处理甚至处理过的TMEs仍然具有毒性。特别是,与氧化应激相关的基因,如AHP1、ATX1、GRX1、TRX1和TRX2,在可直接进入地表水、地下水和沉积物的处理过的TMEs中上调。

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