Ozen Alimet Sema, De Proft Frank, Aviyente Viktorya, Geerlings Paul
Sabanci University, Orhanli, Tuzla, Istanbul, Turkey.
J Phys Chem A. 2006 May 4;110(17):5860-8. doi: 10.1021/jp0568374.
Hydrogen bonding is among the most fundamental interactions in biology and chemistry, providing an extra stabilization of 1-40 kcal/mol to the molecular systems involved. This wide range of stabilization energy underlines the need for a general and comprehensive theory that will explain the formation of hydrogen bonds. While a simple electrostatic model is adequate to describe the bonding patterns in the weak and moderate hydrogen bond regimes, strong hydrogen bonds, on the other hand, require a more complete theory due to the appearance of covalent interactions. In this study, conceptual DFT tools such as local hardness, eta(r) and local softness, s(r), have been used in order to get an alternative view on solving this hydrogen-bonding puzzle as described by Gilli et al. [J. Mol. Struct. 2000, 552, 1]. A series of both homonuclear and heteronuclear resonance-assisted hydrogen bonds of the types O-H...N, N-H...O, N-H...N, and O-H...O with strength varying from weak to very strong have been studied. First of all, DeltaPA and DeltapK(a) values were calculated and correlated to the hydrogen bond energy. Then the electrostatic effects were examined as hard-hard interactions accessible through molecular electrostatic potential, natural population analysis (NPA) charge, and local hardness calculations. Finally, secondary soft-soft interaction effects were entered into the picture described by the local softness values, providing insight into the covalent character of the strong hydrogen bonds.
氢键是生物学和化学中最基本的相互作用之一,为相关分子体系提供了1至40千卡/摩尔的额外稳定性。这种广泛的稳定能凸显了需要一种通用且全面的理论来解释氢键的形成。虽然简单的静电模型足以描述弱氢键和中等强度氢键体系中的键合模式,但另一方面,由于共价相互作用的出现,强氢键需要更完整的理论。在本研究中,已使用诸如局部硬度η(r)和局部软度s(r)等概念性密度泛函理论工具,以便从另一个角度来解决吉利等人[《分子结构杂志》,2000年,第552卷,第1期]所描述的氢键难题。研究了一系列O-H...N、N-H...O、N-H...N和O-H...O类型的同核和异核共振辅助氢键,其强度从弱到非常强不等。首先,计算了ΔPA和ΔpK(a)值,并将其与氢键能相关联。然后通过分子静电势、自然布居分析(NPA)电荷和局部硬度计算来考察作为硬-硬相互作用的静电效应。最后,由局部软度值描述的二级软-软相互作用效应也被纳入考量,从而深入了解强氢键的共价特征。