Suppr超能文献

碳水化合物-芳香族相互作用的大小和性质:岩藻糖-苯复合物的从头算计算

Magnitude and nature of carbohydrate-aromatic interactions: ab initio calculations of fucose-benzene complex.

作者信息

Tsuzuki Seiji, Uchimaru Tadafumi, Mikami Masuhiro

机构信息

National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki 305-8568, Japan.

出版信息

J Phys Chem B. 2009 Apr 23;113(16):5617-21. doi: 10.1021/jp8093726.

Abstract

The stable geometries of fucose-benzene complex and the stabilization energies by formation of the complex (E(form)) were studied by ab initio molecular orbital calculations. The benzene ring has close contact with an O-H or C-H bond of fucose in the optimized geometries (OH/pi hydrogen-bonded structures and CH/pi contact structures). The E(form) calculated for the most stable OH/pi hydrogen-bonded structure was -5.1 kcal/mol. The E(form) calculated for the most stable CH/pi contact structure was -4.5 kcal/mol, which shows that significant attraction exists between the nonpolar surface of fucose and a benzene. The E(form) is close to the interaction energies in typical hydrogen-bonded complexes. A few nearly isoenergetic CH/pi contact structures were found by the calculations, which suggests that the directionality of the carbohydrate-aromatic interaction is weak. The dispersion interaction is the major source of the attraction in the complex. The electrostatic contributions to the attraction are relatively small. Although the size of the interaction energy is not largely different from that of typical hydrogen bonds, the nature of the carbohydrate-aromatic interaction, which is sometimes denoted as a CH/pi hydrogen bond, is completely different from that of typical hydrogen bonds, which have strong directionality due to the strong electrostatic interactions.

摘要

通过从头算分子轨道计算研究了岩藻糖 - 苯配合物的稳定几何结构以及形成配合物时的稳定化能(E(form))。在优化的几何结构中(OH/π氢键结构和CH/π接触结构),苯环与岩藻糖的O - H或C - H键紧密接触。计算得到的最稳定的OH/π氢键结构的E(form)为 -5.1 kcal/mol。计算得到的最稳定的CH/π接触结构的E(form)为 -4.5 kcal/mol,这表明岩藻糖的非极性表面与苯之间存在显著的吸引力。E(form)接近典型氢键配合物中的相互作用能。计算发现了一些能量相近的CH/π接触结构,这表明碳水化合物 - 芳香族相互作用的方向性较弱。色散相互作用是配合物中吸引力的主要来源。静电作用对吸引力的贡献相对较小。尽管相互作用能的大小与典型氢键的大小没有很大差异,但碳水化合物 - 芳香族相互作用(有时被称为CH/π氢键)的性质与典型氢键完全不同,典型氢键由于强静电相互作用而具有很强的方向性。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验