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溴苯与几种电子供体之间配合物的从头算研究:对卤键相互作用的大小和性质的一些见解。

Ab initio investigation of the complexes between bromobenzene and several electron donors: some insights into the magnitude and nature of halogen bonding interactions.

作者信息

Lu Yun-Xiang, Zou Jian-Wei, Wang Yan-Hua, Jiang Yong-Jun, Yu Qing-Sen

机构信息

Department of Chemistry, Zhejiang University, Hangzhou, 310027, China.

出版信息

J Phys Chem A. 2007 Oct 25;111(42):10781-8. doi: 10.1021/jp0740954. Epub 2007 Oct 5.

Abstract

Halogen bonding, a specific intermolecular noncovalent interaction, plays crucial roles in fields as diverse as molecular recognition, crystal engineering, and biological systems. This paper presents an ab initio investigation of a series of dimeric complexes formed between bromobenzene and several electron donors. Such small model systems are selected to mimic halogen bonding interactions found within crystal structures as well as within biological molecules. In all cases, the intermolecular distances are shown to be equal to or below sums of van der Waals radii of the atoms involved. Halogen bonding energies, calculated at the MP2/aug-cc-pVDZ level, span over a wide range, from -1.52 to -15.53 kcal/mol. The interactions become comparable to, or even prevail over, classical hydrogen bonding. For charge-assisted halogen bonds, calculations have shown that the strength decreases in the order OH- > F- > HCO2- > Cl- > Br-, while for neutral systems, their relative strengths attenuate in the order H2CS > H2CO > NH3 > H2S > H2O. These results agree with those of the quantum theory of atoms in molecules (QTAIM) since bond critical points (BCPs) are identified for these halogen bonds. The QTAIM analysis also suggests that strong halogen bonds are more covalent in nature, while weak ones are mostly electrostatic interactions. The electron densities at the BCPs are recommended as a good measure of the halogen bond strength. Finally, natural bond orbital (NBO) analysis has been applied to gain more insights into the origin of halogen bonding interactions.

摘要

卤键作为一种特殊的分子间非共价相互作用,在分子识别、晶体工程和生物系统等诸多领域发挥着关键作用。本文对溴苯与几种电子给体形成的一系列二聚体配合物进行了从头算研究。选择这样的小分子模型体系来模拟晶体结构以及生物分子中的卤键相互作用。在所有情况下,分子间距离均显示等于或低于所涉原子范德华半径之和。在MP2/aug-cc-pVDZ水平计算得到的卤键能范围很广,从-1.52到-15.53千卡/摩尔。这些相互作用与经典氢键相当,甚至更为显著。对于电荷辅助卤键,计算表明其强度按OH- > F- > HCO2- > Cl- > Br-的顺序降低,而对于中性体系,其相对强度按H2CS > H2CO > NH3 > H2S > H2O的顺序减弱。这些结果与分子中原子的量子理论(QTAIM)一致,因为这些卤键都确定了键临界点(BCP)。QTAIM分析还表明,强卤键本质上更具共价性,而弱卤键大多是静电相互作用。建议将BCP处的电子密度作为卤键强度的一个良好衡量指标。最后,应用自然键轨道(NBO)分析以更深入了解卤键相互作用的起源。

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