Yang Xiang-Lei, Otero Francella J, Ewalt Karla L, Liu Jianming, Swairjo Manal A, Köhrer Caroline, RajBhandary Uttam L, Skene Robert J, McRee Duncan E, Schimmel Paul
Department of Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
EMBO J. 2006 Jun 21;25(12):2919-29. doi: 10.1038/sj.emboj.7601154. Epub 2006 May 25.
Aminoacylation of tRNA is the first step of protein synthesis. Here, we report the co-crystal structure of human tryptophanyl-tRNA synthetase and tRNATrp. This enzyme is reported to interact directly with elongation factor 1alpha, which carries charged tRNA to the ribosome. Crystals were generated from a 50/50% mixture of charged and uncharged tRNATrp. These crystals captured two conformations of the complex, which are nearly identical with respect to the protein and a bound tryptophan. They are distinguished by the way tRNA is bound. In one, uncharged tRNA is bound across the dimer, with anticodon and acceptor stem interacting with separate subunits. In this cross-dimer tRNA complex, the class I enzyme has a class II-like tRNA binding mode. This structure accounts for biochemical investigations of human TrpRS, including species-specific charging. In the other conformation, presumptive aminoacylated tRNA is bound only by the anticodon, the acceptor stem being free and having space to interact precisely with EF-1alpha, suggesting that the product of aminoacylation can be directly handed off to EF-1alpha for the next step of protein synthesis.
tRNA的氨酰化是蛋白质合成的第一步。在此,我们报道了人色氨酰-tRNA合成酶与tRNATrp的共晶体结构。据报道,这种酶直接与延伸因子1α相互作用,延伸因子1α将带电荷的tRNA转运到核糖体。晶体由带电荷和不带电荷的tRNATrp的50/50%混合物生成。这些晶体捕获了复合物的两种构象,它们在蛋白质和结合的色氨酸方面几乎相同。它们的区别在于tRNA的结合方式。在一种构象中,不带电荷的tRNA跨二聚体结合,反密码子和受体茎与不同的亚基相互作用。在这种跨二聚体tRNA复合物中,I类酶具有II类样的tRNA结合模式。这种结构解释了对人色氨酰-tRNA合成酶的生化研究,包括物种特异性的氨酰化。在另一种构象中,推测的氨酰化tRNA仅通过反密码子结合,受体茎是自由的,有空间与延伸因子1α精确相互作用,这表明氨酰化产物可以直接传递给延伸因子1α以进行蛋白质合成的下一步。