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碱性亮氨酸拉链因子相互作用的跨物种注释:对封闭相互作用网络进化的洞察。

Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks.

作者信息

Deppmann Christopher D, Alvania Rebecca S, Taparowsky Elizabeth J

机构信息

Department of Biological Sciences, Purdue University, USA.

出版信息

Mol Biol Evol. 2006 Aug;23(8):1480-92. doi: 10.1093/molbev/msl022. Epub 2006 May 26.

Abstract

Dimeric basic leucine zipper (bZIP) factors constitute one of the most important classes of enhancer-type transcription factors. In vertebrates, bZIP factors are involved in many cellular processes, including cell survival, learning and memory, cancer progression, lipid metabolism, and a variety of developmental processes. These factors have the ability to homodimerize and heterodimerize in a specific and predictable manner, resulting in hundreds of dimers with unique effects on transcription. In recent years, several studies have described dimerization preferences for bZIP factors from different species, including Homo sapiens, Drosophila melanogaster, Arabidopsis thaliana, and Saccharomyces cerevisiae. Here, these findings are summarized as novel, graphical representations of closed, interacting protein networks. These representations combine phylogenetic information, DNA-binding properties, and dimerization preference. Beyond summarizing bZIP dimerization preferences within selected species, we have included annotation for a solitary bZIP factor found in the primitive eukaryote, Giardia lamblia, a possible evolutionary precursor to the complex networks of bZIP factors encoded by other genomes. Finally, we discuss the fundamental similarities and differences between dimerization networks within the context of bZIP factor evolution.

摘要

二聚体碱性亮氨酸拉链(bZIP)因子是增强子型转录因子中最重要的类别之一。在脊椎动物中,bZIP因子参与许多细胞过程,包括细胞存活、学习与记忆、癌症进展、脂质代谢以及多种发育过程。这些因子能够以特定且可预测的方式进行同二聚化和异二聚化,从而产生数百种对转录具有独特影响的二聚体。近年来,多项研究描述了来自不同物种(包括智人、黑腹果蝇、拟南芥和酿酒酵母)的bZIP因子的二聚化偏好。在此,这些发现被总结为封闭的、相互作用的蛋白质网络的新颖图形表示。这些表示结合了系统发育信息、DNA结合特性和二聚化偏好。除了总结选定物种内的bZIP二聚化偏好外,我们还对在原始真核生物蓝氏贾第鞭毛虫中发现的一个单独的bZIP因子进行了注释,它可能是其他基因组编码的复杂bZIP因子网络的进化前体。最后,我们在bZIP因子进化的背景下讨论二聚化网络之间的基本异同。

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