用于对庞大数据库进行去识别化研究的SPIN查询工具。
SPIN query tools for de-identified research on a humongous database.
作者信息
McDonald Clement J, Dexter Paul, Schadow Gunther, Chueh Henry C, Abernathy Greg, Hook John, Blevins Lonnie, Overhage J Marc, Berman Jules J
机构信息
Regenstrief Institute.
出版信息
AMIA Annu Symp Proc. 2005;2005:515-9.
Abstract
The Shared Pathology Informatics Network (SPIN), a research initiative of the National Cancer Institute, will allow for the retrieval of more than 4 million pathology reports and specimens. In this paper, we describe the special query tool as developed for the Indianapolis/Regenstrief SPIN node, integrated into the ever-expanding Indiana Network for Patient care (INPC). This query tool allows for the retrieval of de-identified data sets using complex logic, auto-coded final diagnoses, and intrinsically supports multiple types of statistical analyses. The new SPIN/INPC database represents a new generation of the Regenstrief Medical Record system - a centralized, but federated system of repositories.
摘要
共享病理学信息网络（SPIN）是美国国立癌症研究所的一项研究计划，它将允许检索400多万份病理报告和标本。在本文中，我们描述了为印第安纳波利斯/Regenstrief SPIN节点开发的特殊查询工具，该工具已集成到不断扩展的印第安纳患者护理网络（INPC）中。此查询工具允许使用复杂逻辑检索去识别数据集、自动编码的最终诊断结果，并本质上支持多种类型的统计分析。新的SPIN/INPC数据库代表了Regenstrief病历系统的新一代——一个集中但联合的存储库系统。
相似文献
1
SPIN query tools for de-identified research on a humongous database.
AMIA Annu Symp Proc. 2005;2005:515-9.
2
Hierarchical data security in a Query-By-Example interface for a shared database.
J Biomed Inform. 2002 Jun;35(3):171-7. doi: 10.1016/s1532-0464(02)00524-5.
3
Developing a self-service query interface for re-using de-identified electronic health record data.
Stud Health Technol Inform. 2013;192:632-6.
4
Scaling a data retrieval and mining application to the enterprise-wide level.
Proc AMIA Symp. 1999:901-5.
5
Implementation of a query interface for a generic record server.
Int J Med Inform. 2008 Nov;77(11):754-64. doi: 10.1016/j.ijmedinf.2008.05.003. Epub 2008 Jul 9.
6
Temporal expressiveness in querying a time-stamp--based clinical database.
J Am Med Inform Assoc. 2000 Mar-Apr;7(2):152-63. doi: 10.1136/jamia.2000.0070152.
7
Weaving technology and policy together to maintain confidentiality.
J Law Med Ethics. 1997 Summer-Fall;25(2-3):98-110, 82. doi: 10.1111/j.1748-720x.1997.tb01885.x.
8
A dynamic query system for supporting phenotype mining in genetic studies.
Stud Health Technol Inform. 2007;129(Pt 2):1275-9.
9
Facilitating Cohort Discovery by Enhancing Ontology Exploration, Query Management and Query Sharing for Large Clinical Data Repositories.
AMIA Annu Symp Proc. 2018 Apr 16;2017:1685-1694. eCollection 2017.
10
The Shared Health Research Information Network (SHRINE): a prototype federated query tool for clinical data repositories.
J Am Med Inform Assoc. 2009 Sep-Oct;16(5):624-30. doi: 10.1197/jamia.M3191. Epub 2009 Jun 30.
引用本文的文献
1
Lucene-P2: A Distributed Platform for Privacy-Preserving Text-based Search.
IEEE Trans Dependable Secure Comput. 2021 Nov-Dec;18(6):2801-2819. doi: 10.1109/tdsc.2020.2965111. Epub 2020 Jan 9.
2
High throughput tools to access images from clinical archives for research.
J Digit Imaging. 2015 Apr;28(2):194-204. doi: 10.1007/s10278-014-9733-9.
3
Reuse of clinical data.
Yearb Med Inform. 2014 Aug 15;9(1):52-4. doi: 10.15265/IY-2014-0013.
4
Clinical use of an enterprise data warehouse.
AMIA Annu Symp Proc. 2012;2012:189-98. Epub 2012 Nov 3.
5
Feasibility of studying brain morphology in major depressive disorder with structural magnetic resonance imaging and clinical data from the electronic medical record: a pilot study.
Psychiatry Res. 2013 Mar 30;211(3):202-13. doi: 10.1016/j.pscychresns.2012.07.007. Epub 2012 Nov 11.
6
Information discovery on electronic health records using authority flow techniques.
BMC Med Inform Decis Mak. 2010 Oct 22;10:64. doi: 10.1186/1472-6947-10-64.
7
Evaluation of a flowchart-based EHR query system: a case study of RetroGuide.
J Biomed Inform. 2010 Feb;43(1):41-50. doi: 10.1016/j.jbi.2009.06.001. Epub 2009 Jun 26.
8
A self-scaling, distributed information architecture for public health, research, and clinical care.
J Am Med Inform Assoc. 2007 Jul-Aug;14(4):527-33. doi: 10.1197/jamia.M2371. Epub 2007 Apr 25.
9
Availability and quality of paraffin blocks identified in pathology archives: a multi-institutional study by the Shared Pathology Informatics Network (SPIN).
BMC Cancer. 2007 Feb 28;7:37. doi: 10.1186/1471-2407-7-37.
本文引用的文献
1
The Indiana network for patient care: a working local health information infrastructure. An example of a working infrastructure collaboration that links data from five health systems and hundreds of millions of entries.
Health Aff (Millwood). 2005 Sep-Oct;24(5):1214-20. doi: 10.1377/hlthaff.24.5.1214.
2
Doublet method for very fast autocoding.
BMC Med Inform Decis Mak. 2004 Sep 15;4:16. doi: 10.1186/1472-6947-4-16.
3
A submission model for use in the indexing, searching, and retrieval of distributed pathology case and tissue specimens.
Stud Health Technol Inform. 2004;107(Pt 2):1264-7.
4
Patients with elevated liver enzymes are not at higher risk for statin hepatotoxicity.
Gastroenterology. 2004 May;126(5):1287-92. doi: 10.1053/j.gastro.2004.02.015.
5
Extracting structured information from free text pathology reports.
AMIA Annu Symp Proc. 2003;2003:584-8.
6
LOINC, a universal standard for identifying laboratory observations: a 5-year update.
Clin Chem. 2003 Apr;49(4):624-33. doi: 10.1373/49.4.624.
7
Analysis of identifier performance using a deterministic linkage algorithm.
Proc AMIA Symp. 2002:305-9.
8
Electronic laboratory reporting: barriers, solutions and findings.
J Public Health Manag Pract. 2001 Nov;7(6):60-6. doi: 10.1097/00124784-200107060-00007.
9
Maternal and infant use of erythromycin and other macrolide antibiotics as risk factors for infantile hypertrophic pyloric stenosis.
J Pediatr. 2001 Sep;139(3):380-4. doi: 10.1067/mpd.2001.117577.
Zotero 插件