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单体孔蛋白OmpG的晶体结构

Crystal structure of the monomeric porin OmpG.

作者信息

Subbarao Gowtham V, van den Berg Bert

机构信息

Program in Molecular Medicine, University of Massachusetts Medical School, 373 Plantation Street, Worcester, MA 01605, USA.

出版信息

J Mol Biol. 2006 Jul 21;360(4):750-9. doi: 10.1016/j.jmb.2006.05.045. Epub 2006 Jun 2.

Abstract

The outer membrane (OM) of Gram-negative bacteria contains a large number of channel proteins that mediate the uptake of ions and nutrients necessary for growth and functioning of the cell. An important group of OM channel proteins are the porins, which mediate the non-specific, diffusion-based passage of small (<600 Da) polar molecules. All porins of Gram-negative bacteria that have been crystallized to date form stable trimers, with each monomer composed of a 16-stranded beta-barrel with a relatively narrow central pore. In contrast, the OmpG porin is unique, as it appears to function as a monomer. We have determined the X-ray crystal structure of OmpG from Escherichia coli to a resolution of 2.3 A. The structure shows a 14-stranded beta-barrel with a relatively simple architecture. Due to the absence of loops that fold back into the channel, OmpG has a large ( approximately 13 A) central pore that is considerably wider than those of other E. coli porins, and very similar in size to that of the toxin alpha-hemolysin. The architecture of the channel, together with previous biochemical and other data, suggests that OmpG may form a non-specific channel for the transport of larger oligosaccharides. The structure of OmpG provides the starting point for engineering studies aiming to generate selective channels and for the development of biosensors.

摘要

革兰氏阴性菌的外膜含有大量通道蛋白,这些蛋白介导细胞生长和功能所需离子及营养物质的摄取。外膜通道蛋白的一个重要类别是孔蛋白,它们介导小分子(<600 Da)极性分子基于扩散的非特异性通透。迄今为止已结晶的所有革兰氏阴性菌孔蛋白均形成稳定的三聚体,每个单体由一个具有相对狭窄中心孔的16股β桶组成。相比之下,OmpG孔蛋白则独具特色,因为它似乎以单体形式发挥功能。我们已将来自大肠杆菌的OmpG的X射线晶体结构解析至2.3 Å的分辨率。该结构显示为一个具有相对简单结构的14股β桶。由于不存在折回通道的环,OmpG具有一个较大的(约13 Å)中心孔,其宽度明显大于其他大肠杆菌孔蛋白的中心孔,且大小与毒素α-溶血素的中心孔非常相似。通道的结构,连同先前的生化及其他数据表明,OmpG可能形成一个用于运输较大寡糖的非特异性通道。OmpG的结构为旨在生成选择性通道的工程研究以及生物传感器的开发提供了起点。

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