Köster Stefan, van Pee Katharina, Yildiz Özkan
Department of Structural Biology, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.
Department of Structural Biology, Max Planck Institute of Biophysics, Frankfurt am Main, Germany.
Methods Enzymol. 2015;557:149-66. doi: 10.1016/bs.mie.2015.01.018. Epub 2015 Mar 24.
OmpG is a pore-forming protein from E. coli outer membranes. Unlike the classical outer membrane porins, which are trimers, the OmpG channel is a monomeric β-barrel made of 14 antiparallel β-strands with short periplasmic turns and longer extracellular loops. The channel activity of OmpG is pH dependent and the channel is gated by the extracellular loop L6. At neutral/high pH, the channel is open and permeable for substrate molecules with a size up to 900 Da. At acidic pH, loop L6 folds across the channel and blocks the pore. The channel blockage at acidic pH appears to be triggered by the protonation of a histidine pair on neighboring β-strands, which repel one another, resulting in the rearrangement of loop L6 and channel closure. OmpG was purified by refolding from inclusion bodies and crystallized in two and three dimensions. Crystallization and analysis by electron microscopy and X-ray crystallography revealed the fundamental mechanisms essential for the channel activity.
OmpG是一种来自大肠杆菌外膜的成孔蛋白。与由三聚体组成的经典外膜孔蛋白不同,OmpG通道是由14条反平行β链构成的单体β桶状结构,其周质侧转角短,胞外侧环长。OmpG的通道活性依赖于pH值,通道由胞外侧环L6门控。在中性/高pH值时,通道开放,对大小达900 Da的底物分子具有通透性。在酸性pH值时,环L6折叠穿过通道并堵塞孔道。酸性pH值下的通道堵塞似乎是由相邻β链上一对组氨酸的质子化引发的,这对组氨酸相互排斥,导致环L6重排和通道关闭。OmpG通过从包涵体中重折叠进行纯化,并进行了二维和三维结晶。通过电子显微镜和X射线晶体学进行的结晶和分析揭示了通道活性所必需的基本机制。