Bhushan Deepti, Pandey Aarti, Chattopadhyay Arnab, Choudhary Mani Kant, Chakraborty Subhra, Datta Asis, Chakraborty Niranjan
National Centre for Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.
J Proteome Res. 2006 Jul;5(7):1711-20. doi: 10.1021/pr060116f.
The extracellular matrix (ECM) or cell wall is a dynamic system and serves as the first line mediator in cell signaling to perceive and transmit extra- and intercellular signals in many pathways. Although ECM is a conserved compartment ubiquitously present throughout evolution, a compositional variation does exist among different organisms. ECM proteins account for 10% of the ECM mass, however, comprise several hundreds of different molecules with diverse functions. To understand the function of ECM proteins, we have developed the cell wall proteome of a crop legume, chickpea (Cicer arietinum). This comprehensive overview of the proteome would provide a basis for future comparative proteomic efforts for this important crop. Proteomic analyses revealed new ECM proteins of unknown functions vis-à-vis the presence of many known cell wall proteins. In addition, we report here evidence for the presence of unexpected proteins with known biochemical activities, which have never been associated with ECM.
细胞外基质(ECM)或细胞壁是一个动态系统,在细胞信号传导中作为第一线介质,在许多途径中感知和传递细胞外和细胞间信号。尽管ECM是一个在整个进化过程中普遍存在的保守区室,但不同生物体之间确实存在组成差异。ECM蛋白占ECM质量的10%,然而,它们由数百种具有不同功能的不同分子组成。为了了解ECM蛋白的功能,我们开发了一种豆科作物鹰嘴豆(Cicer arietinum)的细胞壁蛋白质组。蛋白质组的这一全面概述将为未来对这种重要作物进行比较蛋白质组学研究提供基础。蛋白质组学分析揭示了相对于许多已知细胞壁蛋白而言功能未知的新ECM蛋白。此外,我们在此报告了存在具有已知生化活性但从未与ECM相关联的意外蛋白质的证据。