Igoshin Oleg A, Price Chester W, Savageau Michael A
Department of Biomedical Engineering, One Shields Avenue, University of California, Davis, CA 95616, USA.
Mol Microbiol. 2006 Jul;61(1):165-84. doi: 10.1111/j.1365-2958.2006.05212.x.
The sporulation process of the bacterium Bacillus subtilis unfolds by means of separate but co-ordinated programmes of gene expression within two unequal cell compartments, the mother cell and the smaller forespore. sigmaF is the first compartment-specific transcription factor activated during this process, and it is controlled at the post-translational level by a partner-switching mechanism that restricts sigmaF activity to the forespore. The crux of this mechanism lies in the ability of the anti-sigma factor SpoIIAB (AB) to form alternative complexes either with sigmaF, holding it in an inactive form, or with the anti-anti-sigma factor SpoIIAA (AA) and a nucleotide, either ATP or ADP. In the complex with AB and ATP, AA is phosphorylated on a serine residue and released, making AB available to capture sigmaF in an inactive complex. Subsequent activation of sigmaF requires the intervention of the SpoIIE serine phosphatase to dephosphorylate AA, which can then attack the AB-sigmaF complex to induce the release of sigmaF. By incorporating biochemical, biophysical and genetic data from the literature we have constructed an integrative mathematical model of this partner-switching network. The model predicts that the self-enhancing formation of a long-lived complex of AA, AB and ADP transforms the network into an essentially irreversible hysteretic switch, thereby explaining the sharp, robust and irreversible activation of sigmaF in the forespore compartment. The model also clarifies the contributions of the partly redundant mechanisms that ensure correct spatial and temporal activation of sigmaF, reproduces the behaviour of various mutants and makes strong, testable predictions.
枯草芽孢杆菌的芽孢形成过程通过母细胞和较小的前芽孢这两个不等的细胞区室中独立但协调的基因表达程序展开。σF是此过程中第一个被激活的区室特异性转录因子,它在翻译后水平上通过一种伴侣切换机制受到调控,该机制将σF的活性限制在前芽孢中。此机制的关键在于抗σ因子SpoIIAB(AB)能够与σF形成替代复合物,使其保持无活性形式,或者与抗抗σ因子SpoIIAA(AA)以及一种核苷酸(ATP或ADP)形成复合物。在与AB和ATP的复合物中,AA在一个丝氨酸残基上被磷酸化并释放,使得AB能够捕获处于无活性复合物中的σF。随后σF的激活需要SpoIIE丝氨酸磷酸酶的干预来使AA去磷酸化,然后AA可以攻击AB-σF复合物以诱导σF的释放。通过整合文献中的生化、生物物理和遗传数据,我们构建了这个伴侣切换网络的综合数学模型。该模型预测,AA、AB和ADP的长寿命复合物的自我增强形成将网络转变为一个基本上不可逆的滞后开关,从而解释了前芽孢区室中σF的急剧、稳健和不可逆的激活。该模型还阐明了确保σF正确的空间和时间激活的部分冗余机制的作用,再现了各种突变体的行为并做出了有力的、可检验的预测。