• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于含时密度泛函理论对水溶液中L-丙氨酸的真空紫外电子圆二色性的研究

Vacuum-ultraviolet electronic circular dichroism of L-alanine in aqueous solution investigated by time-dependent density functional theory.

作者信息

Fukuyama Takayuki, Matsuo Koichi, Gekko Kunihiko

机构信息

Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Higashi-Hiroshima 739-8526, Japan.

出版信息

J Phys Chem A. 2005 Aug 11;109(31):6928-33. doi: 10.1021/jp051763h.

DOI:10.1021/jp051763h
PMID:16834050
Abstract

The electronic circular dichoism (ECD) of L-alanine in the vacuum-ultraviolet region was calculated for various optimized structures using time-dependent density functional theory (TDDFT) to assign the CD spectrum observed experimentally in aqueous solution down to 140 nm [Matsuo, et al. Chem. Lett. 2002, 826]. The structure of L-alanine in vacuo was optimized using density functional theory (DFT) at the B3LYP/6-31G* level. Its hydrated structure was optimized with nine water molecules (six and three around carboxyl and amino groups, respectively) using DFT and a continuum model (Onsager model). The dihedral angles of carboxyl and amino groups in the optimized hydrated structure differed greatly from those in the crystal and in nonhydrated structures optimized using a continuum model only. The ECD spectrum calculated for the hydrated structure had two successive positive peaks with molar ellipticities of about 2000 deg cm2 dmol(-1) at around 205 and 185 nm, which were close to those observed experimentally. These positive peaks were attributable to n pi* transitions of the carboxyl group, with the latter peak also influenced by the pi pi* transition of the carboxyl group that originates below 175 nm. A small negative peak observed at around 252 nm was also predicted from the hydrated structure. These results demonstrate that the hydrated water molecules around the zwitterions play a crucial role in stabilizing the conformation of L-alanine in aqueous solution and that TDDFT is useful for the ab initio assignment of ECD spectra down to the vacuum-ultraviolet region.

摘要

使用含时密度泛函理论(TDDFT)对L-丙氨酸在真空紫外区域的电子圆二色性(ECD)进行了计算,针对各种优化结构,以确定在水溶液中实验观测到的直至140 nm的圆二色光谱[松尾等人,《化学通讯》,2002年,826页]。采用密度泛函理论(DFT)在B3LYP/6 - 31G水平对真空中L-丙氨酸的结构进行了优化。使用DFT和连续介质模型(Onsager模型),用九个水分子(羧基和氨基周围分别为六个和三个)对其水合结构进行了优化。优化后的水合结构中羧基和氨基的二面角与晶体中的以及仅使用连续介质模型优化的非水合结构中的二面角有很大差异。为水合结构计算的ECD光谱在约205和185 nm处有两个连续的正峰,摩尔椭圆率约为2000 deg cm2 dmol(-1),这与实验观测值相近。这些正峰归因于羧基的n→π跃迁,后一个峰还受到源于175 nm以下的羧基的π→π*跃迁的影响。从水合结构还预测到在约252 nm处有一个小的负峰。这些结果表明两性离子周围的水合水分子在稳定水溶液中L-丙氨酸的构象方面起着关键作用,并且TDDFT对于从真空紫外区域开始的ECD光谱的从头算归属是有用的。

相似文献

1
Vacuum-ultraviolet electronic circular dichroism of L-alanine in aqueous solution investigated by time-dependent density functional theory.基于含时密度泛函理论对水溶液中L-丙氨酸的真空紫外电子圆二色性的研究
J Phys Chem A. 2005 Aug 11;109(31):6928-33. doi: 10.1021/jp051763h.
2
Experimental and theoretical studies of vacuum-ultraviolet electronic circular dichroism of hydroxy acids in aqueous solution.水相羟基酸的真空紫外电子圆二色性的实验和理论研究。
Chirality. 2011;23 Suppl 1:E52-8. doi: 10.1002/chir.20962. Epub 2011 Apr 28.
3
Theoretical calculation of electronic circular dichroism of the rotationally restricted 3,8''-biflavonoid morelloflavone.旋转受限的3,8''-双黄酮桑橙黄酮电子圆二色性的理论计算
J Org Chem. 2007 Nov 23;72(24):9010-7. doi: 10.1021/jo071134z. Epub 2007 Oct 24.
4
Interpretation of synchrotron radiation circular dichroism spectra of anionic, cationic, and zwitterionic dialanine forms.阴离子、阳离子和两性离子二丙氨酸形式的同步辐射圆二色光谱解读
J Phys Chem A. 2007 Apr 12;111(14):2750-60. doi: 10.1021/jp068811y. Epub 2007 Mar 17.
5
Theoretical UV circular dichroism of cyclo(L-Proline-L-Proline).环(L-脯氨酸-L-脯氨酸)的理论紫外圆二色性
J Phys Chem A. 2006 Feb 9;110(5):1925-33. doi: 10.1021/jp052924k.
6
Influence of molecular geometry, exchange-correlation functional, and solvent effects in the modeling of vertical excitation energies in phthalocyanines using time-dependent density functional theory (TDDFT) and polarized continuum model TDDFT methods: can modern computational chemistry methods explain experimental controversies?使用含时密度泛函理论(TDDFT)和极化连续介质模型TDDFT方法对酞菁中垂直激发能进行建模时分子几何结构、交换相关泛函和溶剂效应的影响:现代计算化学方法能否解释实验争议?
J Phys Chem A. 2007 Dec 20;111(50):12901-13. doi: 10.1021/jp0759731. Epub 2007 Nov 16.
7
Vacuum-ultraviolet electronic circular dichroism study of methyl α-D-glucopyranoside in aqueous solution by time-dependent density functional theory.真空紫外电子圆二色性研究在水溶液中通过时间依赖密度泛函理论的甲基 -α-D-吡喃葡萄糖苷。
J Phys Chem A. 2012 Oct 11;116(40):9996-10003. doi: 10.1021/jp306914s. Epub 2012 Sep 27.
8
Electronic and vibrational circular dichroism of aromatic amino acids by density functional theory.基于密度泛函理论的芳香族氨基酸的电子圆二色性和振动圆二色性
Chirality. 2006 Aug;18(8):652-61. doi: 10.1002/chir.20277.
9
The conformation of tetraalanine in water determined by polarized Raman, FT-IR, and VCD spectroscopy.通过偏振拉曼光谱、傅里叶变换红外光谱和振动圆二色光谱测定水中四丙氨酸的构象。
J Am Chem Soc. 2004 Mar 10;126(9):2768-76. doi: 10.1021/ja039452c.
10
Vibrational spectra of alpha-amino acids in the zwitterionic state in aqueous solution and the solid state: DFT calculations and the influence of hydrogen bonding.水溶液和固态中两性离子状态的α-氨基酸的振动光谱:密度泛函理论计算及氢键的影响
J Phys Chem A. 2008 Oct 16;112(41):10333-47. doi: 10.1021/jp8037945. Epub 2008 Sep 25.

引用本文的文献

1
Amino acid gas phase circular dichroism and implications for the origin of biomolecular asymmetry.氨基酸气相圆二色性及其对生物分子不对称起源的启示。
Nat Commun. 2022 Jan 26;13(1):502. doi: 10.1038/s41467-022-28184-0.
2
Synchrotron-radiation vacuum-ultraviolet circular dichroism spectroscopy in structural biology: an overview.结构生物学中的同步辐射真空紫外圆二色光谱:综述
Biophys Physicobiol. 2019 Feb 6;16:41-58. doi: 10.2142/biophysico.16.0_41. eCollection 2019.