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分子动力学模拟中纳米颗粒相互作用的系统粗粒化

Systematic coarse-graining of nanoparticle interactions in molecular dynamics simulation.

作者信息

Izvekov Sergei, Violi Angela, Voth Gregory A

机构信息

Center for Biophysical Modeling and Simulation and Department of Chemistry, University of Utah, 315 S. 1400 E., Salt Lake City, UT 84112-0850, USA.

出版信息

J Phys Chem B. 2005 Sep 15;109(36):17019-24. doi: 10.1021/jp0530496.

Abstract

A recently developed multiscale coarse-graining procedure [Izvekov, S.; Voth, G. A. J. Phys. Chem. B 2005, 109, 2469] is extended to derive coarse-grained models for nanoparticles. The methodology is applied to C(60) and to carbonaceous nanoparticles produced in combustion environments. The coarse-graining of the interparticle force field is accomplished applying a force-matching procedure to data obtained from trajectories and forces from all-atom MD simulations. The CG models are shown to reproduce accurately the structural properties of the nanoparticle systems studied, while allowing for MD simulations of much larger self-assembled nanoparticle systems.

摘要

最近开发的一种多尺度粗粒化方法[伊兹韦科夫,S.;沃思,G. A.《物理化学杂志B》2005年,109卷,2469页]被扩展用于推导纳米颗粒的粗粒化模型。该方法应用于C(60)以及燃烧环境中产生的碳质纳米颗粒。通过对全原子分子动力学模拟得到的轨迹和力数据应用力匹配程序,实现了颗粒间力场的粗粒化。结果表明,粗粒化模型能够准确再现所研究纳米颗粒系统的结构特性,同时还能对更大的自组装纳米颗粒系统进行分子动力学模拟。

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