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多尺度粗粒化方法。III. 粗粒化势的成对加和性及变分计算新基函数的检验。

The multiscale coarse-graining method. III. A test of pairwise additivity of the coarse-grained potential and of new basis functions for the variational calculation.

作者信息

Das Avisek, Andersen Hans C

机构信息

Department of Chemistry, Stanford University, Stanford, California 94305, USA.

出版信息

J Chem Phys. 2009 Jul 21;131(3):034102. doi: 10.1063/1.3173812.

Abstract

The multiscale coarse-graining (MS-CG) method, proposed by Izvekov and Voth [J. Phys. Chem. B 109, 2469 (2005); Izvekov and VothJ. Chem. Phys. 123, 134105 (2005)], is a method for determining the effective potential energy function for a coarse-grained model of a fluid using data obtained from molecular dynamics (MD) simulation of the corresponding atomically detailed model. The method has been given a rigorous statistical mechanical basis [Noid et al. J. Chem. Phys. 128, 244114 (2008); Noid et al., J. Chem. Phys. 128, 244115 (2008)]. The coarse-grained (CG) potentials obtained using the MS-CG method are an approximate variational solution for the exact many-body potential of mean force for the coarse-grained sites. In this paper we apply this method to study the many-body potential of mean force among solutes in a simple model of a solution of Lennard-Jones particles. We use a new set of basis functions for the variational calculation that is useful when the coarse-grained potential is approximately equal to an arbitrarily complicated pairwise additive, central interaction among the sites of the coarse-grained model. For this model, pairwise additivity of the many-body potential of mean force is a very good approximation when the solute concentration is low, and it becomes less accurate for high concentrations, indicating the importance of many-body contributions to the coarse-grained potential. The best possible pairwise additive CG potential of the solute particles is found to be quite long ranged for all concentrations except those for which the mole fraction of solute is very close to unity. We discuss strategies for construction of short-ranged potentials for efficient but accurate CG MD simulation. We also discuss how the choice of basis functions for the variational calculation can be used to provide smoothing of the calculated CG potential function to overcome statistical sampling error in the atomistic simulation data used for the generation of the potential.

摘要

伊兹韦科夫和沃思[《物理化学杂志B》109, 2469 (2005); 伊兹韦科夫和沃思,《化学物理杂志》123, 134105 (2005)]提出的多尺度粗粒化(MS-CG)方法,是一种利用从相应原子详细模型的分子动力学(MD)模拟获得的数据,来确定流体粗粒化模型有效势能函数的方法。该方法已具有严格的统计力学基础[诺伊德等人,《化学物理杂志》128, 244114 (2008); 诺伊德等人,《化学物理杂志》128, 244115 (2008)]。使用MS-CG方法获得的粗粒化(CG)势能是粗粒化位点精确多体平均力势能的近似变分解。在本文中,我们应用此方法研究了 Lennard-Jones 粒子溶液简单模型中溶质之间的多体平均力势能。我们在变分计算中使用了一组新的基函数,当粗粒化势能近似等于粗粒化模型位点之间任意复杂的成对加性中心相互作用时,这组基函数很有用。对于该模型,当溶质浓度较低时,多体平均力势能的成对加性是一个非常好的近似,而对于高浓度时它的准确性会降低,这表明多体贡献对粗粒化势能的重要性。发现溶质粒子的最佳成对加性CG势能对于所有浓度都具有相当长的范围,除了溶质摩尔分数非常接近1的那些浓度。我们讨论了构建短程势能以进行高效但准确的CG MD模拟的策略。我们还讨论了如何使用变分计算的基函数选择来平滑计算的CG势能函数,以克服用于生成势能的原子模拟数据中的统计采样误差。

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