Bruvo-Madarić Branka, Plohl Miroslav, Ugarković D
Division of Molecular Biology, Rudjer Bosković Institute, Bijenicka cesta 54, Zagreb, Croatia.
Genetica. 2007 May;130(1):35-42. doi: 10.1007/s10709-006-0017-2. Epub 2006 Aug 1.
Major satellites of species in the genus Pimelia comprise large portions of their genomes and belong to seven major satellite families which all originate from a common ancestral sequence. Here we present the results of comprehensive screening of 26 Pimelia species belonging to three distinct geographic groups (Ibero-Balearic, African and Canary Islands) for the presence of different Pimelia satellite families in their genomes. Dot-blot hybridization experiments suggest that together with one dominant, highly abundant satellite family, other families are also present in genomes of the majority of examined Pimelia species, but as low-copy number repeats. The estimated abundance of these underrepresented repeats is about 4,000 copies per haploid genome. Signals of highly abundant satellite family from P. scabrosa (PSCA) in examined congeneric species, obtained after PCR amplification and Southern hybridization under high stringency conditions, corroborate sequence preservation of low-copy representatives of satellite families. PRINS localized low-copy repeats within the pericentromeric regions of all chromosomes. These results point to the existence of an extensive library of repetitive DNAs that was already present in the genome of the common ancestor of extant Pimelia taxa, and shifts the period of diversification of Pimelia satellites far in the history of this genus.
拟步甲属物种的主要卫星 DNA 占其基因组的很大一部分,属于七个主要卫星 DNA 家族,它们均起源于一个共同的祖先序列。在此,我们展示了对属于三个不同地理组(伊比利亚 - 巴利阿里群岛、非洲和加那利群岛)的 26 种拟步甲物种进行全面筛选的结果,以检测其基因组中不同拟步甲卫星 DNA 家族的存在情况。斑点杂交实验表明,除了一个占主导地位、高度丰富的卫星 DNA 家族外,其他家族也存在于大多数被检测的拟步甲物种的基因组中,但为低拷贝数重复序列。这些低丰度重复序列的估计丰度约为每个单倍体基因组 4000 个拷贝。在高严格条件下进行 PCR 扩增和 Southern 杂交后,在所检测的同属物种中获得的来自粗糙拟步甲(PSCA)的高度丰富卫星 DNA 家族的信号,证实了卫星 DNA 家族低拷贝代表的序列保守性。引物原位标记(PRINS)将低拷贝重复序列定位在所有染色体的着丝粒周围区域。这些结果表明,现存拟步甲类群的共同祖先基因组中已经存在一个广泛的重复 DNA 文库,并将拟步甲卫星 DNA 的多样化时期推至该属历史的早期。