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一种参与γ-六氯环己烷降解的外源分离质粒pLB1的完整核苷酸序列。

Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation.

作者信息

Miyazaki Ryo, Sato Yukari, Ito Michihiro, Ohtsubo Yoshiyuki, Nagata Yuji, Tsuda Masataka

机构信息

Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Sendai 980-8577, Japan.

出版信息

Appl Environ Microbiol. 2006 Nov;72(11):6923-33. doi: 10.1128/AEM.01531-06. Epub 2006 Sep 8.

Abstract

The alpha-proteobacterial strain Sphingobium japonicum UT26 utilizes a highly chlorinated pesticide, gamma-hexachlorocyclohexane (gamma-HCH), as a sole source of carbon and energy, and haloalkane dehalogenase LinB catalyzes the second step of gamma-HCH degradation in UT26. Functional complementation of a linB mutant of UT26, UT26DB, was performed by the exogenous plasmid isolation technique using HCH-contaminated soil, leading to our successful identification of a plasmid, pLB1, carrying the linB gene. Complete sequencing analysis of pLB1, with a size of 65,998 bp, revealed that it carries (i) 50 totally annotated coding sequences, (ii) an IS6100 composite transposon containing two copies of linB, and (iii) potential genes for replication, maintenance, and conjugative transfer with low levels of similarity to other homologues. A minireplicon assay demonstrated that a 2-kb region containing the predicted repA gene and its upstream region of pLB1 functions as an autonomously replicating unit in UT26. Furthermore, pLB1 was conjugally transferred from UT26DB to other alpha-proteobacterial strains but not to any of the beta- or gamma-proteobacterial strains examined to date. These results suggest that this exogenously isolated novel plasmid contributes to the dissemination of at least some genes for gamma-HCH degradation in the natural environment. To the best of our knowledge, this is the first detailed report of a plasmid involved in gamma-HCH degradation.

摘要

α-变形杆菌菌株日本鞘氨醇单胞菌UT26利用高氯农药γ-六氯环己烷(γ-HCH)作为唯一的碳源和能源,卤代烷脱卤酶LinB催化UT26中γ-HCH降解的第二步。利用受六氯环己烷污染的土壤,通过外源质粒分离技术对UT26的linB突变体UT26DB进行功能互补,从而成功鉴定出携带linB基因的质粒pLB1。对大小为65,998 bp的pLB1进行全序列分析,结果显示它携带(i)50个完全注释的编码序列,(ii)一个包含两个linB拷贝的IS6100复合转座子,以及(iii)与其他同源物相似度较低的复制、维持和接合转移相关的潜在基因。一个微型复制子分析表明,包含预测的repA基因及其pLB1上游区域的2-kb区域在UT26中作为自主复制单元发挥作用。此外,pLB1从UT26DB接合转移到其他α-变形杆菌菌株,但未转移到迄今为止检测的任何β-或γ-变形杆菌菌株。这些结果表明,这种外源分离的新型质粒有助于在自然环境中传播至少一些γ-HCH降解基因。据我们所知,这是关于参与γ-HCH降解的质粒的第一份详细报告。

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